Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01004228.1 Kokia drynarioides strain JFW-HI SEQ_117484, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1897
ACGTcount: A:0.34, C:0.15, G:0.15, T:0.36


Found at i:1573 original size:16 final size:16

Alignment explanation


    Indices: 1550--1596  Score: 51
    Period size: 16  Copynumber: 3.0  Consensus size: 16

       1540 ATATGTATTC

                           *
       1550 AAAA-ATAAAATTATT
          1 AAAATATAAAATTATA

              *        *    
       1565 AATATATAAAAATATA
          1 AAAATATAAAATTATA

                   *        
       1581 AAAATATTAAATTATA
          1 AAAATATAAAATTATA

       1597 TATTTAAATA


Statistics
Matches: 25,  Mismatches: 6, Indels: 1
        0.78            0.19        0.03

Matches are distributed among these distances:
  15    3  0.12
  16   22  0.88

ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34


Consensus pattern (16 bp):   
AAAATATAAAATTATA
Done.