Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01004236.1 Kokia drynarioides strain JFW-HI SEQ_117499, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4843
ACGTcount: A:0.33, C:0.18, G:0.17, T:0.31


Found at i:3913 original size:17 final size:17

Alignment explanation


    Indices: 3883--3925  Score: 68
    Period size: 17  Copynumber: 2.5  Consensus size: 17

       3873 GCAAATGCAG

                   *         
       3883 TGACAATTAAAATGTAA
          1 TGACAATGAAAATGTAA

                     *       
       3900 TGACAATGAGAATGTAA
          1 TGACAATGAAAATGTAA

                     
       3917 TGACAATGA
          1 TGACAATGA

       3926 TTACTAATAG


Statistics
Matches: 24,  Mismatches: 2, Indels: 0
        0.92            0.08        0.00

Matches are distributed among these distances:
  17   24  1.00

ACGTcount: A:0.49, C:0.07, G:0.19, T:0.26


Consensus pattern (17 bp):   
TGACAATGAAAATGTAA
Done.