Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01004240.1 Kokia drynarioides strain JFW-HI SEQ_117510, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 793

Length: 1322
ACGTcount: A:0.36, C:0.21, G:0.11, T:0.31


Found at i:781 original size:79 final size:79

Alignment explanation


    Indices: 645--813  Score: 268
    Period size: 79  Copynumber: 2.1  Consensus size: 79

        635 TAAACCGATG

                  *                                             *            
        645 ATCCTGACACCCAGTGCCTAGCAGATAAACCGCAAAAGTGAGCCCAACTCTAGTTGGATTAACCA
          1 ATCCTGGCACCCAGTGCCTAGCAGATAAACCGCAAAAGTGAGCCCAACTCTACTTGGATTAACCA

                     *    
        710 ACAACATCCGTCAA
         66 ACAACATCCATCAA

                                  *                                          
        724 ATCCTGGCACCCAGTGCCTAGCGGATAAACCGCAAAAGTGAGCCCATA-TCTACTTGGATTAACC
          1 ATCCTGGCACCCAGTGCCTAGCAGATAAACCGCAAAAGTGAGCCCA-ACTCTACTTGGATTAACC

                 *         
        788 AACAATATCCATCAA
         65 AACAACATCCATCAA

                 *     
        803 ATCCTAGCACC
          1 ATCCTGGCACC

        814 GCATAGTGGA


Statistics
Matches: 83,  Mismatches: 6, Indels: 2
        0.91            0.07        0.02

Matches are distributed among these distances:
  79   82  0.99
  80    1  0.01

ACGTcount: A:0.34, C:0.31, G:0.16, T:0.19


Consensus pattern (79 bp):   
ATCCTGGCACCCAGTGCCTAGCAGATAAACCGCAAAAGTGAGCCCAACTCTACTTGGATTAACCA
ACAACATCCATCAA
Done.