Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01004246.1 Kokia drynarioides strain JFW-HI SEQ_117521, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 873

Length: 1455
ACGTcount: A:0.30, C:0.21, G:0.20, T:0.29


Found at i:327 original size:45 final size:45

Alignment explanation


    Indices: 197--333  Score: 159
    Period size: 45  Copynumber: 3.0  Consensus size: 45

        187 GGGAGGAATA

                  *   *  *            *              **   
        197 GAGTATCGCGATGACTCGTCAAACT-CAGCCTGATATCCTTCCCTT
          1 GAGTATTGCGGTGGCTCGTCAAACTGAAG-CTGATATCCTTGGCTT

             *       *             *   *                 
        242 GCGTATTGCTGTGGCTCGTCAAATTGAGGCTGATATCCTTGGCTT
          1 GAGTATTGCGGTGGCTCGTCAAACTGAAGCTGATATCCTTGGCTT

            *                                            
        287 TAGTATTGCGGTGGCTCGTCAAACTGAAGCTGATATCCTTGGCTT
          1 GAGTATTGCGGTGGCTCGTCAAACTGAAGCTGATATCCTTGGCTT

              
        332 GA
          1 GA

        334 TGAGCTATGC


Statistics
Matches: 75,  Mismatches: 16, Indels: 2
        0.81            0.17        0.02

Matches are distributed among these distances:
  45   74  0.99
  46    1  0.01

ACGTcount: A:0.20, C:0.23, G:0.25, T:0.32


Consensus pattern (45 bp):   
GAGTATTGCGGTGGCTCGTCAAACTGAAGCTGATATCCTTGGCTT
Done.