Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01004250.1 Kokia drynarioides strain JFW-HI SEQ_117530, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 6151
ACGTcount: A:0.35, C:0.14, G:0.15, T:0.36


Found at i:2223 original size:10 final size:10

Alignment explanation


    Indices: 2210--2248  Score: 60
    Period size: 10  Copynumber: 3.9  Consensus size: 10

       2200 AAAAGTTCAA

                      
       2210 AAAAATTAAT
          1 AAAAATTAAT

                      
       2220 AAAAATTAAT
          1 AAAAATTAAT

                     *
       2230 AAAAATTAAC
          1 AAAAATTAAT

                *    
       2240 AAAATTTAA
          1 AAAAATTAA

       2249 AAAGTTTACA


Statistics
Matches: 27,  Mismatches: 2, Indels: 0
        0.93            0.07        0.00

Matches are distributed among these distances:
  10   27  1.00

ACGTcount: A:0.69, C:0.03, G:0.00, T:0.28


Consensus pattern (10 bp):   
AAAAATTAAT

Found at i:6134 original size:2 final size:2

Alignment explanation


    Indices: 6127--6151  Score: 50
    Period size: 2  Copynumber: 12.5  Consensus size: 2

       6117 TGGAATTAAG

                                                 
       6127 AT AT AT AT AT AT AT AT AT AT AT AT A
          1 AT AT AT AT AT AT AT AT AT AT AT AT A


Statistics
Matches: 23,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   2   23  1.00

ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48


Consensus pattern (2 bp):   
AT

Done.