Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01004252.1 Kokia drynarioides strain JFW-HI SEQ_117532, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 6323
ACGTcount: A:0.34, C:0.14, G:0.16, T:0.36


Found at i:1114 original size:10 final size:10

Alignment explanation


    Indices: 1076--1114  Score: 60
    Period size: 10  Copynumber: 3.9  Consensus size: 10

       1066 TGTAAACTTT

                *    *
       1076 TTAAATTTTG
          1 TTAATTTTTA

                      
       1086 TTAATTTTTA
          1 TTAATTTTTA

                      
       1096 TTAATTTTTA
          1 TTAATTTTTA

                     
       1106 TTAATTTTT
          1 TTAATTTTT

       1115 TTGAACTTTT


Statistics
Matches: 27,  Mismatches: 2, Indels: 0
        0.93            0.07        0.00

Matches are distributed among these distances:
  10   27  1.00

ACGTcount: A:0.28, C:0.00, G:0.03, T:0.69


Consensus pattern (10 bp):   
TTAATTTTTA

Found at i:1124 original size:20 final size:20

Alignment explanation


    Indices: 1076--1131  Score: 60
    Period size: 20  Copynumber: 2.8  Consensus size: 20

       1066 TGTAAACTTT

                *    *          
       1076 TTAAATTTTGTTAATTTTTA
          1 TTAACTTTTATTAATTTTTA

                *               
       1096 TTAATTTTTATTAATTTTT-
          1 TTAACTTTTATTAATTTTTA

                        *    
       1115 TTGAACTTTTATGAATT
          1 TT-AACTTTTATTAATT

       1132 ATACATGAAC


Statistics
Matches: 31,  Mismatches: 4, Indels: 2
        0.84            0.11        0.05

Matches are distributed among these distances:
  19    2  0.06
  20   29  0.94

ACGTcount: A:0.29, C:0.02, G:0.05, T:0.64


Consensus pattern (20 bp):   
TTAACTTTTATTAATTTTTA
Done.