Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01004255.1 Kokia drynarioides strain JFW-HI SEQ_117539, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2123
ACGTcount: A:0.39, C:0.12, G:0.13, T:0.36


Found at i:854 original size:20 final size:21

Alignment explanation


    Indices: 829--870  Score: 68
    Period size: 20  Copynumber: 2.0  Consensus size: 21

        819 CATTAAAAAC

                                 
        829 TTTTTTAAATAAAT-TTTAAA
          1 TTTTTTAAATAAATGTTTAAA

                   *             
        849 TTTTTTATATAAATGTTTAAA
          1 TTTTTTAAATAAATGTTTAAA

             
        870 T
          1 T

        871 ATTATCCTTA


Statistics
Matches: 20,  Mismatches: 1, Indels: 1
        0.91            0.05        0.05

Matches are distributed among these distances:
  20   13  0.65
  21    7  0.35

ACGTcount: A:0.40, C:0.00, G:0.02, T:0.57


Consensus pattern (21 bp):   
TTTTTTAAATAAATGTTTAAA

Found at i:1426 original size:59 final size:58

Alignment explanation


    Indices: 1304--1501  Score: 252
    Period size: 59  Copynumber: 3.3  Consensus size: 58

       1294 CTTGACTAAC

                *              *         *                          *    
       1304 AATTAATTTCAATGGAGGTAGGTCCATGTGATGTTATATATATAAACAATTAGTTTATGCA
          1 AATTGATTTCAATGGAGGTGGGTCCATGTAATG---TATATATAAACAATTAGTTTTTGCA

                     *                                  *              
       1365 AATTGATTTTAATGGAGGTGGGTCCATGTAATGTGATATATAAATAATTAGTTTTTGCA
          1 AATTGATTTCAATGGAGGTGGGTCCATGTAATGT-ATATATAAACAATTAGTTTTTGCA

                                              *                           
       1424 AATTGATTTCAATGGAGGTGGGTCCATGTGATATATATTTATATAAACAATTAGTTTTTGCA
          1 AATTGATTTCAATGGAGGTGGGTCCATGT-A-ATGTA--TATATAAACAATTAGTTTTTGCA

                     *      
       1486 AATTGATTTAAATGGA
          1 AATTGATTTCAATGGA

       1502 TAGGTCCTTT


Statistics
Matches: 122,  Mismatches: 10, Indels: 9
        0.87            0.07        0.06

Matches are distributed among these distances:
  58    1  0.01
  59   50  0.41
  60    2  0.02
  61   32  0.26
  62   37  0.30

ACGTcount: A:0.34, C:0.07, G:0.20, T:0.39


Consensus pattern (58 bp):   
AATTGATTTCAATGGAGGTGGGTCCATGTAATGTATATATAAACAATTAGTTTTTGCA
Done.