Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01004264.1 Kokia drynarioides strain JFW-HI SEQ_117552, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1712
ACGTcount: A:0.34, C:0.19, G:0.20, T:0.27

Warning! 1 characters in sequence are not A, C, G, or T


Found at i:1637 original size:6 final size:6

Alignment explanation


    Indices: 1606--1674  Score: 54
    Period size: 6  Copynumber: 11.8  Consensus size: 6

       1596 TTTTATTGGG

                            *        **                    **       
       1606 TTTAAA TTT--A TTCAAA TTTATT TTTAAA TTTAAA TTTATCT TTTAAA
          1 TTTAAA TTTAAA TTTAAA TTTAAA TTTAAA TTTAAA TTTA-AA TTTAAA

                            *         
       1653 TTTAAA TTT-AA TTAAAA TTTAA
          1 TTTAAA TTTAAA TTTAAA TTTAA

       1675 GTGGATTTAA


Statistics
Matches: 47,  Mismatches: 12, Indels: 8
        0.70            0.18        0.12

Matches are distributed among these distances:
   4    3  0.06
   5    4  0.09
   6   36  0.77
   7    4  0.09

ACGTcount: A:0.42, C:0.03, G:0.00, T:0.55


Consensus pattern (6 bp):   
TTTAAA

Found at i:1651 original size:19 final size:18

Alignment explanation


    Indices: 1619--1662  Score: 79
    Period size: 19  Copynumber: 2.4  Consensus size: 18

       1609 AAATTTATTC

                              
       1619 AAATTTATTTTTAAATTT
          1 AAATTTATTTTTAAATTT

                               
       1637 AAATTTATCTTTTAAATTT
          1 AAATTTAT-TTTTAAATTT

                   
       1656 AAATTTA
          1 AAATTTA

       1663 ATTAAAATTT


Statistics
Matches: 25,  Mismatches: 0, Indels: 1
        0.96            0.00        0.04

Matches are distributed among these distances:
  18    8  0.32
  19   17  0.68

ACGTcount: A:0.41, C:0.02, G:0.00, T:0.57


Consensus pattern (18 bp):   
AAATTTATTTTTAAATTT
Done.