Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01004268.1 Kokia drynarioides strain JFW-HI SEQ_117556, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 859

Length: 1433
ACGTcount: A:0.35, C:0.17, G:0.20, T:0.28


Found at i:1147 original size:41 final size:41

Alignment explanation


    Indices: 1090--1226  Score: 170
    Period size: 41  Copynumber: 3.3  Consensus size: 41

       1080 GGTGCTTATG

                                *       *        *     
       1090 ATTGCTCTGACCTTTAGCGGTGCCTT-CTCAAAAGC-ATCGCT
          1 ATTGCTCTGACCTTTAGCGGCG-CTTGCCCAAAAGCGCT-GCT

                    *                     *          
       1131 ATTGCTCTAACCTTTAGCGGCGCTTGCCCATAAGCGCTGCT
          1 ATTGCTCTGACCTTTAGCGGCGCTTGCCCAAAAGCGCTGCT

                                          *      **  
       1172 ATTGCTCTGACCTTTAGCGGCGCTTGCCCATAAGCGCCACT
          1 ATTGCTCTGACCTTTAGCGGCGCTTGCCCAAAAGCGCTGCT

                          
       1213 ATTGCTCTGACCTT
          1 ATTGCTCTGACCTT

       1227 ATTGCTCTAC


Statistics
Matches: 86,  Mismatches: 8, Indels: 4
        0.88            0.08        0.04

Matches are distributed among these distances:
  40    3  0.03
  41   82  0.95
  42    1  0.01

ACGTcount: A:0.18, C:0.31, G:0.20, T:0.31


Consensus pattern (41 bp):   
ATTGCTCTGACCTTTAGCGGCGCTTGCCCAAAAGCGCTGCT
Done.