Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01000427.1 Kokia drynarioides strain JFW-HI SEQ_111259, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 795

Length: 1325
ACGTcount: A:0.30, C:0.12, G:0.20, T:0.38


Found at i:198 original size:17 final size:17

Alignment explanation


    Indices: 178--211  Score: 52
    Period size: 17  Copynumber: 2.0  Consensus size: 17

        168 TATGTTTTAA

                              
        178 TTTATGTATTT-TTTTTG
          1 TTTAT-TATTTATTTTTG

                             
        195 TTTATTATTTATTTTTG
          1 TTTATTATTTATTTTTG

        212 GTGGAACAAT


Statistics
Matches: 16,  Mismatches: 0, Indels: 2
        0.89            0.00        0.11

Matches are distributed among these distances:
  16    5  0.31
  17   11  0.69

ACGTcount: A:0.15, C:0.00, G:0.09, T:0.76


Consensus pattern (17 bp):   
TTTATTATTTATTTTTG
Done.