Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01004275.1 Kokia drynarioides strain JFW-HI SEQ_117565, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3112
ACGTcount: A:0.36, C:0.12, G:0.17, T:0.36


Found at i:2459 original size:12 final size:12

Alignment explanation


    Indices: 2442--2478  Score: 65
    Period size: 12  Copynumber: 3.0  Consensus size: 12

       2432 TGACACGAAT

                        
       2442 TTTTTATTATTA
          1 TTTTTATTATTA

                        
       2454 TTTTTATTATTA
          1 TTTTTATTATTA

                         
       2466 TTTTTATATATTA
          1 TTTTTAT-TATTA

       2479 AAAAATAAAA


Statistics
Matches: 24,  Mismatches: 0, Indels: 1
        0.96            0.00        0.04

Matches are distributed among these distances:
  12   19  0.79
  13    5  0.21

ACGTcount: A:0.27, C:0.00, G:0.00, T:0.73


Consensus pattern (12 bp):   
TTTTTATTATTA
Done.