Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01004284.1 Kokia drynarioides strain JFW-HI SEQ_117580, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1742
ACGTcount: A:0.33, C:0.14, G:0.15, T:0.37


Found at i:575 original size:17 final size:17

Alignment explanation


    Indices: 555--596  Score: 57
    Period size: 17  Copynumber: 2.4  Consensus size: 17

        545 CTCCCTTGAC

                          *  
        555 CTTTAACCTTCCATTTT
          1 CTTTAACCTTCCATATT

                      *      
        572 CTTTAACCTTTCATATT
          1 CTTTAACCTTCCATATT

                    
        589 CTTGTAAC
          1 CTT-TAAC

        597 TACTTTTCCT


Statistics
Matches: 22,  Mismatches: 2, Indels: 1
        0.88            0.08        0.04

Matches are distributed among these distances:
  17   18  0.82
  18    4  0.18

ACGTcount: A:0.21, C:0.26, G:0.02, T:0.50


Consensus pattern (17 bp):   
CTTTAACCTTCCATATT

Found at i:1273 original size:32 final size:29

Alignment explanation


    Indices: 1232--1290  Score: 82
    Period size: 32  Copynumber: 1.9  Consensus size: 29

       1222 TTGAGATGAT

                                            
       1232 AATTAAATTATATATTTTTATAAATTTTAATG
          1 AATTAAATTA-A-ATTTTTAT-AATTTTAATG

                               *       
       1264 AATTAAATTAAATTTTTATTATTTTAA
          1 AATTAAATTAAATTTTTATAATTTTAA

       1291 AAAAATTTAA


Statistics
Matches: 26,  Mismatches: 1, Indels: 3
        0.87            0.03        0.10

Matches are distributed among these distances:
  29    7  0.27
  30    8  0.31
  31    1  0.04
  32   10  0.38

ACGTcount: A:0.44, C:0.00, G:0.02, T:0.54


Consensus pattern (29 bp):   
AATTAAATTAAATTTTTATAATTTTAATG
Done.