Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01004286.1 Kokia drynarioides strain JFW-HI SEQ_117583, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 840

Length: 1401
ACGTcount: A:0.31, C:0.11, G:0.21, T:0.37


Found at i:533 original size:37 final size:36

Alignment explanation


    Indices: 481--657  Score: 210
    Period size: 37  Copynumber: 4.8  Consensus size: 36

        471 ACACAAATTC

                   *                             
        481 AGGCTATATGCCTAGTAGGCTGTGTGCCGGTGTTTTT
          1 AGGCTATGTGCCTAGTAGGCT-TGTGCCGGTGTTTTT

             *                                   
        518 AAGCTATGTGCCTAGTAGGCTGTGTGCCGGTGTTTTT
          1 AGGCTATGTGCCTAGTAGGCT-TGTGCCGGTGTTTTT

                                      *    *    *
        555 AGGCTATGTGCCTAGTAGGCTTCGTGTCGGTATTTTC
          1 AGGCTATGTGCCTAGTAGGCTT-GTGCCGGTGTTTTT

               *                             *   
        592 AGGTTATGTGCCTAGTAGGCTTCGTGCCGGTGTATTT
          1 AGGCTATGTGCCTAGTAGGCTT-GTGCCGGTGTTTTT

            *    *         *  *          
        629 GGGCTTTGTGCCTAGCAGACTTTGTGCCG
          1 AGGCTATGTGCCTAGTAGGC-TTGTGCCG

        658 ATGATTCCAA


Statistics
Matches: 122,  Mismatches: 16, Indels: 4
        0.86            0.11        0.03

Matches are distributed among these distances:
  36    1  0.01
  37  119  0.98
  38    2  0.02

ACGTcount: A:0.13, C:0.18, G:0.32, T:0.37


Consensus pattern (36 bp):   
AGGCTATGTGCCTAGTAGGCTTGTGCCGGTGTTTTT

Done.