Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01004290.1 Kokia drynarioides strain JFW-HI SEQ_117589, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3142
ACGTcount: A:0.35, C:0.16, G:0.17, T:0.32


Found at i:2648 original size:34 final size:34

Alignment explanation


    Indices: 2583--2651  Score: 86
    Period size: 34  Copynumber: 2.0  Consensus size: 34

       2573 TCAAAAGAAG

                                    *         
       2583 AAGAAGCAATATTTCACTATAACAGTCGATTTAA
          1 AAGAAGCAATATTTCACTATAACAATCGATTTAA

                    *            *     *       
       2617 AAGAAGCAGTATTTCAAC-ATGACAATTGATTTAA
          1 AAGAAGCAATATTTC-ACTATAACAATCGATTTAA

             
       2651 A
          1 A

       2652 CATTAAAACA


Statistics
Matches: 30,  Mismatches: 4, Indels: 2
        0.83            0.11        0.06

Matches are distributed among these distances:
  34   28  0.93
  35    2  0.07

ACGTcount: A:0.45, C:0.13, G:0.13, T:0.29


Consensus pattern (34 bp):   
AAGAAGCAATATTTCACTATAACAATCGATTTAA
Done.