genome.fa.s4291.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01004291.1 Kokia drynarioides strain JFW-HI SEQ_117591, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  168746

Tables:   1   

This is table  1  of  1  ( 32 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
8189--8256	34	2.0	34	94	0	118	25	10	16	48	1.77
10817--10860	17	2.9	15	81	15	54	68	0	31	0	0.90
10817--10866	15	3.3	16	83	13	61	66	0	32	2	1.03
13392--13440	23	2.1	24	84	3	64	26	16	6	51	1.68
20576--20619	18	2.5	17	85	7	61	54	13	15	15	1.71
20582--20619	18	2.1	18	95	0	67	55	13	15	15	1.70
33898--33936	20	2.0	20	89	0	60	35	5	10	48	1.59
38058--38094	3	12.3	3	100	0	74	32	0	0	67	0.91
42097--42122	13	2.0	13	100	0	52	38	15	23	23	1.92
42117--42151	12	2.9	12	82	0	52	28	22	31	17	1.96
47800--47890	29	3.1	29	82	0	92	40	20	18	19	1.91
47980--48048	28	2.5	28	79	9	77	37	23	11	27	1.89
52041--52081	21	2.0	21	85	9	57	51	0	7	41	1.30
52729--52823	37	2.6	37	86	0	127	33	22	10	33	1.88
53735--53806	28	2.6	28	90	0	108	37	29	8	25	1.85
53933--54236	54	5.6	54	88	1	387	28	28	13	29	1.94
68729--68765	3	12.3	3	100	0	74	67	0	0	32	0.91
73636--73691	17	3.3	18	80	9	55	39	12	25	23	1.89
76908--76967	26	2.3	27	80	11	72	26	21	16	35	1.95
81043--81174	29	4.6	29	79	3	131	46	21	12	18	1.82
83097--83350	54	4.7	54	87	2	341	24	27	14	33	1.94
87617--87824	13	14.9	13	65	22	52	69	6	6	18	1.32
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
87728--87824	10	9.3	10	73	15	72	72	5	2	20	1.15
87728--87822	15	5.9	17	78	9	67	72	5	2	20	1.14
87728--87852	11	11.0	11	69	20	53	71	4	4	20	1.21
94957--94988	2	16.0	2	100	0	64	50	0	0	50	1.00
98112--98231	43	2.8	42	86	3	159	30	10	21	36	1.88
98427--98484	28	2.1	28	86	0	80	18	13	15	51	1.76
109513--109580	34	2.0	34	100	0	136	50	17	8	23	1.74
110264--110349	19	4.5	19	75	2	66	36	26	19	17	1.94
152753--152806	3	17.0	3	77	11	54	61	3	35	0	1.14
153823--153880	19	3.1	19	78	14	66	75	0	17	6	1.01

Tables:   1

The End!