Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01004292.1 Kokia drynarioides strain JFW-HI SEQ_117592, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3338
ACGTcount: A:0.33, C:0.16, G:0.17, T:0.35


Found at i:2277 original size:21 final size:21

Alignment explanation


    Indices: 2253--2294  Score: 75
    Period size: 21  Copynumber: 2.0  Consensus size: 21

       2243 ATCATTAGGT

                        *        
       2253 ATAGAATATCCTTAAATTTAG
          1 ATAGAATATCCTCAAATTTAG

                                 
       2274 ATAGAATATCCTCAAATTTAG
          1 ATAGAATATCCTCAAATTTAG

       2295 CAAGTATGCT


Statistics
Matches: 20,  Mismatches: 1, Indels: 0
        0.95            0.05        0.00

Matches are distributed among these distances:
  21   20  1.00

ACGTcount: A:0.43, C:0.12, G:0.10, T:0.36


Consensus pattern (21 bp):   
ATAGAATATCCTCAAATTTAG
Done.