Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01004294.1 Kokia drynarioides strain JFW-HI SEQ_117597, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2025
ACGTcount: A:0.36, C:0.13, G:0.18, T:0.33


Found at i:502 original size:50 final size:47

Alignment explanation


    Indices: 388--503  Score: 133
    Period size: 50  Copynumber: 2.4  Consensus size: 47

        378 GTTATAGTAA

                                                 *  *      
        388 TGCAGATAAACTACCACTTAATATTATTATGGATAAGTCATCACTTT
          1 TGCAGATAAACTACCACTTAATATTATTATGGATAAGCCACCACTTT

            *                              *   *          *   
        435 GGCAGATAAACTACCACTTAATAATAATATTGTGGTTAAGCCACCAGTTT
          1 TGCAGATAAACTACCACTTAAT-AT--TATTATGGATAAGCCACCACTTT

                *       *      
        485 TGCAAATAAACTGCCACTT
          1 TGCAGATAAACTACCACTT

        504 CTTCCACCTT


Statistics
Matches: 57,  Mismatches: 9, Indels: 3
        0.83            0.13        0.04

Matches are distributed among these distances:
  47   21  0.37
  48    2  0.04
  50   34  0.60

ACGTcount: A:0.36, C:0.19, G:0.13, T:0.32


Consensus pattern (47 bp):   
TGCAGATAAACTACCACTTAATATTATTATGGATAAGCCACCACTTT
Done.