Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01004304.1 Kokia drynarioides strain JFW-HI SEQ_117615, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 8160
ACGTcount: A:0.36, C:0.15, G:0.15, T:0.34


Found at i:2703 original size:31 final size:31

Alignment explanation


    Indices: 2668--2740  Score: 74
    Period size: 31  Copynumber: 2.4  Consensus size: 31

       2658 AATCCCTATA

                                           
       2668 TTTTAATTTAACCAAATTTAGTCTCTCTACT
          1 TTTTAATTTAACCAAATTTAGTCTCTCTACT

                  * ****   *          *    
       2699 TTTTAAATCGGTCAATTTTAGTCTCTGTACT
          1 TTTTAATTTAACCAAATTTAGTCTCTCTACT

               *       
       2730 TTTCAATTTAA
          1 TTTTAATTTAA

       2741 TCCTAACTCA


Statistics
Matches: 30,  Mismatches: 12, Indels: 0
        0.71            0.29        0.00

Matches are distributed among these distances:
  31   30  1.00

ACGTcount: A:0.27, C:0.16, G:0.07, T:0.49


Consensus pattern (31 bp):   
TTTTAATTTAACCAAATTTAGTCTCTCTACT
Done.