Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01004305.1 Kokia drynarioides strain JFW-HI SEQ_117617, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2467
ACGTcount: A:0.37, C:0.18, G:0.12, T:0.34


Found at i:2172 original size:36 final size:36

Alignment explanation


    Indices: 2120--2188  Score: 102
    Period size: 36  Copynumber: 1.9  Consensus size: 36

       2110 AATATAATCA

                       *      *    *            
       2120 GTCACATGACATGAAGAATATACTCACATATTCTTT
          1 GTCACATGACAAGAAGAACATACCCACATATTCTTT

                    *                        
       2156 GTCACATGGCAAGAAGAACATACCCACATATTC
          1 GTCACATGACAAGAAGAACATACCCACATATTC

       2189 ACTTTCTTAA


Statistics
Matches: 29,  Mismatches: 4, Indels: 0
        0.88            0.12        0.00

Matches are distributed among these distances:
  36   29  1.00

ACGTcount: A:0.38, C:0.23, G:0.13, T:0.26


Consensus pattern (36 bp):   
GTCACATGACAAGAAGAACATACCCACATATTCTTT

Found at i:2303 original size:23 final size:23

Alignment explanation


    Indices: 2283--2460  Score: 248
    Period size: 23  Copynumber: 7.7  Consensus size: 23

       2273 AGATAATCCA

                        *         *
       2283 ATTAATATTTAATCATAAATCAT
          1 ATTAATATTTAAGCATAAATCAC

             **         *  *       
       2306 AACAATATTTAAACACAAATCAC
          1 ATTAATATTTAAGCATAAATCAC

                *                  
       2329 ATTAGTATTTAAGCATAAATCAC
          1 ATTAATATTTAAGCATAAATCAC

                        *     *    
       2352 ATTAATATTTAACCATAACTCAC
          1 ATTAATATTTAAGCATAAATCAC

                      *    *      *
       2375 ATTAATATTTGAGCACAAATCAT
          1 ATTAATATTTAAGCATAAATCAC

                                   
       2398 ATTAATATTTAAGCATAAATCAC
          1 ATTAATATTTAAGCATAAATCAC

                                   
       2421 ATTAATATTTAAGCATAAATCAC
          1 ATTAATATTTAAGCATAAATCAC

                             
       2444 ATTAATATTTAAGCATA
          1 ATTAATATTTAAGCATA

       2461 GATATAA


Statistics
Matches: 134,  Mismatches: 21, Indels: 0
        0.86            0.14        0.00

Matches are distributed among these distances:
  23  134  1.00

ACGTcount: A:0.47, C:0.14, G:0.04, T:0.35


Consensus pattern (23 bp):   
ATTAATATTTAAGCATAAATCAC

Done.