Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01004308.1 Kokia drynarioides strain JFW-HI SEQ_117621, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 666

Length: 1110
ACGTcount: A:0.25, C:0.16, G:0.17, T:0.41


Found at i:947 original size:20 final size:19

Alignment explanation


    Indices: 914--954  Score: 64
    Period size: 20  Copynumber: 2.1  Consensus size: 19

        904 TAGCCCTTTA

                     *         
        914 TTTTCTTTTTTTTTTCAAT
          1 TTTTCTTTTATTTTTCAAT

                                
        933 TTTTACTTTTATTTTTCAAT
          1 TTTT-CTTTTATTTTTCAAT

              
        953 TT
          1 TT

        955 AGTCCTTTTT


Statistics
Matches: 20,  Mismatches: 1, Indels: 1
        0.91            0.05        0.05

Matches are distributed among these distances:
  19    4  0.20
  20   16  0.80

ACGTcount: A:0.15, C:0.10, G:0.00, T:0.76


Consensus pattern (19 bp):   
TTTTCTTTTATTTTTCAAT

Found at i:967 original size:20 final size:19

Alignment explanation


    Indices: 920--968  Score: 62
    Period size: 20  Copynumber: 2.5  Consensus size: 19

        910 TTTATTTTCT

                           *   
        920 TTTTTTTTTCAATTTTTAC
          1 TTTTTTTTTCAATTTGTAC

                               * 
        939 TTTTATTTTTCAATTTAGTCC
          1 TTTT-TTTTTCAATTT-GTAC

                     
        960 TTTTTTTTT
          1 TTTTTTTTT

        969 TATCTTTTAT


Statistics
Matches: 26,  Mismatches: 2, Indels: 3
        0.84            0.06        0.10

Matches are distributed among these distances:
  19    4  0.15
  20   16  0.62
  21    6  0.23

ACGTcount: A:0.14, C:0.10, G:0.02, T:0.73


Consensus pattern (19 bp):   
TTTTTTTTTCAATTTGTAC
Done.