genome.fa.s4315.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01004315.1 Kokia drynarioides strain JFW-HI SEQ_117630, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  134219

Tables:   1   

This is table  1  of  1  ( 82 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4024--4062	19	2.1	19	85	0	51	33	17	20	28	1.96
10277--10351	33	2.3	33	97	0	141	52	17	2	28	1.58
10300--10351	14	3.0	19	63	26	51	50	21	3	25	1.65
10412--10457	23	2.0	24	91	8	78	63	0	0	36	0.95
15347--15588	124	2.0	124	95	0	439	38	14	21	26	1.91
22170--22217	22	2.1	22	84	3	60	43	12	14	29	1.82
33111--33183	24	3.0	24	67	25	71	35	2	6	54	1.41
34654--34748	40	2.3	41	89	3	147	35	11	20	32	1.88
37494--37538	22	2.0	22	83	8	56	35	8	4	51	1.54
39529--40006	165	2.9	165	81	7	522	27	7	8	56	1.57
52125--52380	29	8.7	30	78	9	233	37	23	1	37	1.62
52131--52525	29	13.6	27	73	16	208	36	23	2	37	1.69
52125--52380	58	4.4	59	78	9	265	37	23	1	37	1.62
52125--52429	59	5.2	57	75	11	219	38	23	1	36	1.66
52398--52470	28	2.7	27	78	18	87	34	28	2	34	1.72
54184--54312	67	1.9	67	96	0	240	37	13	17	31	1.88
61164--61732	209	2.7	209	89	0	834	35	17	23	23	1.95
61660--61780	48	2.5	48	98	0	233	34	14	27	23	1.93
61451--61989	257	2.1	257	96	0	979	35	16	24	23	1.95
61708--62294	209	2.8	209	91	0	922	35	15	24	24	1.94
61244--62198	466	2.0	466	92	0	1577	35	16	24	23	1.94
62176--62321	37	3.6	37	70	19	112	33	15	23	27	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
62213--62370	49	3.5	47	70	19	138	34	15	24	25	1.94
62130--62380	86	2.9	86	87	1	353	35	15	24	25	1.94
61919--62584	290	2.3	290	87	2	924	35	16	24	24	1.95
62796--63194	30	13.5	29	74	12	262	37	22	3	36	1.71
62817--63105	29	9.8	29	75	14	175	38	22	2	36	1.69
62796--63016	87	2.5	87	78	8	223	40	21	1	36	1.62
62796--63194	59	6.8	59	78	8	318	37	22	3	36	1.71
62969--63226	29	8.8	28	68	18	118	34	25	5	35	1.78
62795--63259	117	4.0	116	78	9	371	36	23	3	35	1.73
62796--63279	59	8.2	59	77	8	286	36	23	3	35	1.73
63088--63279	29	6.6	28	72	11	127	34	24	5	35	1.78
63464--63501	20	1.9	20	84	10	51	39	10	2	47	1.52
65606--65663	16	3.6	16	76	17	57	55	1	1	41	1.20
65667--65743	34	2.4	33	82	6	104	53	3	3	38	1.38
68332--68462	17	7.4	17	80	10	136	39	2	3	54	1.28
68339--68463	6	21.8	6	70	11	66	40	2	3	54	1.29
68339--68465	22	5.6	22	72	11	87	39	2	3	55	1.29
68325--68428	39	2.6	40	81	7	113	37	3	3	54	1.37
68332--68462	35	3.7	34	80	7	136	39	2	3	54	1.28
69123--69176	21	2.8	19	75	8	56	53	1	1	42	1.22
70306--70514	29	7.2	29	70	18	91	33	26	1	37	1.68
70284--70514	58	4.0	58	84	5	197	35	26	1	36	1.67
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
70324--70667	58	5.9	58	80	9	278	33	26	3	36	1.74
70284--70513	30	7.9	27	72	14	117	35	26	1	36	1.67
70527--70689	58	2.8	57	82	9	197	33	25	6	35	1.81
72724--72829	27	3.9	27	80	9	126	29	16	21	33	1.95
72720--72825	54	2.0	54	90	0	167	29	15	21	33	1.94
72728--72842	54	2.1	54	81	0	131	30	15	19	34	1.93
73087--73156	27	2.6	27	81	2	79	20	14	27	38	1.91
82655--82707	27	2.2	22	74	25	54	22	16	37	22	1.94
82661--82714	27	2.0	27	100	0	108	22	18	33	25	1.97
91516--91544	7	4.1	7	100	0	58	44	0	0	55	0.99
96078--96314	120	2.0	120	98	0	456	19	18	22	39	1.92
97242--97344	40	2.6	40	85	3	145	51	4	24	19	1.66
105719--105788	30	2.3	30	80	7	88	38	12	14	34	1.84
109362--109424	31	2.1	30	85	8	83	28	17	9	44	1.80
112930--112973	2	22.0	2	100	0	88	50	0	0	50	1.00
116766--116811	19	2.3	21	85	10	62	32	2	0	65	1.05
119530--119595	17	3.8	17	78	9	53	40	6	1	51	1.36
120294--120350	18	3.1	17	80	14	60	59	0	0	40	0.97
121285--121395	29	3.8	30	75	8	111	36	26	1	36	1.67
121291--121489	59	3.4	58	76	8	188	32	26	3	38	1.73
121800--121978	97	1.8	98	86	5	265	30	16	12	40	1.86
127680--128602	97	9.5	97	89	0	1353	37	21	26	15	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
127832--128555	49	14.9	49	69	12	260	37	21	26	14	1.92
129096--129182	6	14.8	6	72	8	72	40	2	3	54	1.30
129082--129167	41	2.1	41	89	4	129	37	3	2	56	1.29
129096--129167	23	3.3	23	74	21	84	40	2	1	55	1.23
129060--129189	17	7.5	17	76	5	82	36	2	5	55	1.36
129911--129945	9	3.7	9	85	14	52	60	0	0	40	0.97
130985--131149	29	5.6	28	71	10	107	35	25	1	37	1.67
130994--131360	58	6.3	57	75	13	200	32	26	3	37	1.73
131109--131331	29	7.8	28	67	20	90	32	28	3	35	1.74
131046--131361	58	5.5	58	77	8	290	32	26	3	37	1.74
131054--131344	114	2.5	112	81	7	307	32	26	3	37	1.74
131702--131762	17	3.5	17	84	2	77	44	3	3	49	1.35
131705--131779	34	2.2	34	83	4	89	45	4	4	46	1.40
132482--132530	25	2.0	24	88	4	71	53	2	0	44	1.12
133521--133930	30	13.8	29	82	9	416	33	30	2	32	1.72
133520--133930	59	6.9	58	84	7	450	33	30	2	32	1.72

Tables:   1

The End!