Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01004319.1 Kokia drynarioides strain JFW-HI SEQ_117635, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2833
ACGTcount: A:0.36, C:0.14, G:0.15, T:0.36


Found at i:1141 original size:24 final size:23

Alignment explanation


    Indices: 1123--1167  Score: 65
    Period size: 24  Copynumber: 1.9  Consensus size: 23

       1113 CAATTTAACT

                                     
       1123 AAATA-AATTATTAAAAATTCATAA
          1 AAATAGAA-TATTAAAAATT-ATAA

                                 
       1147 AAATAGAATATTAAAAATTAT
          1 AAATAGAATATTAAAAATTAT

       1168 TTAAATTAAT


Statistics
Matches: 20,  Mismatches: 0, Indels: 3
        0.87            0.00        0.13

Matches are distributed among these distances:
  23    2  0.10
  24   16  0.80
  25    2  0.10

ACGTcount: A:0.62, C:0.02, G:0.02, T:0.33


Consensus pattern (23 bp):   
AAATAGAATATTAAAAATTATAA

Found at i:2036 original size:31 final size:33

Alignment explanation


    Indices: 1972--2044  Score: 98
    Period size: 31  Copynumber: 2.3  Consensus size: 33

       1962 ATATATATAT

                                 *      *    
       1972 ATAATTTTATAATTATTATTTTAAAAAATTTTA
          1 ATAATTTTATAATTATTATTTAAAAAAAATTTA

                                              
       2005 ATAATTTTAT-ATT-TT-TTTAAAAAAAAATTTA
          1 ATAATTTTATAATTATTATTT-AAAAAAAATTTA

                     
       2036 ATAATTTTA
          1 ATAATTTTA

       2045 AAATCATTTG


Statistics
Matches: 37,  Mismatches: 2, Indels: 4
        0.86            0.05        0.09

Matches are distributed among these distances:
  30    3  0.08
  31   21  0.57
  32    3  0.08
  33   10  0.27

ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53


Consensus pattern (33 bp):   
ATAATTTTATAATTATTATTTAAAAAAAATTTA
Done.