Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01004328.1 Kokia drynarioides strain JFW-HI SEQ_117652, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2148
ACGTcount: A:0.28, C:0.20, G:0.19, T:0.33


Found at i:1745 original size:29 final size:29

Alignment explanation


    Indices: 1712--1771  Score: 120
    Period size: 29  Copynumber: 2.1  Consensus size: 29

       1702 AAATTAACGC

                                         
       1712 ATCTTTTTCAATAATCTATATTACATTTT
          1 ATCTTTTTCAATAATCTATATTACATTTT

                                         
       1741 ATCTTTTTCAATAATCTATATTACATTTT
          1 ATCTTTTTCAATAATCTATATTACATTTT

              
       1770 AT
          1 AT

       1772 TTATATGAAT


Statistics
Matches: 31,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  29   31  1.00

ACGTcount: A:0.32, C:0.13, G:0.00, T:0.55


Consensus pattern (29 bp):   
ATCTTTTTCAATAATCTATATTACATTTT

Done.