Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01004335.1 Kokia drynarioides strain JFW-HI SEQ_117662, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2100
ACGTcount: A:0.29, C:0.20, G:0.20, T:0.30


Found at i:1309 original size:21 final size:21

Alignment explanation


    Indices: 1283--1325  Score: 68
    Period size: 21  Copynumber: 2.0  Consensus size: 21

       1273 TAGGGTCCAT

                         *       
       1283 TTGCCCCGGAGGAGTAAAGTA
          1 TTGCCCCGGAGGAATAAAGTA

                  *              
       1304 TTGCCCGGGAGGAATAAAGTA
          1 TTGCCCCGGAGGAATAAAGTA

             
       1325 T
          1 T

       1326 CGCGATGGCT


Statistics
Matches: 20,  Mismatches: 2, Indels: 0
        0.91            0.09        0.00

Matches are distributed among these distances:
  21   20  1.00

ACGTcount: A:0.30, C:0.16, G:0.33, T:0.21


Consensus pattern (21 bp):   
TTGCCCCGGAGGAATAAAGTA

Found at i:1452 original size:45 final size:45

Alignment explanation


    Indices: 1321--1456  Score: 182
    Period size: 45  Copynumber: 3.0  Consensus size: 45

       1311 GGAGGAATAA

                 *   *              *  *           **    
       1321 AGTATCGCGATGGCTCGTCAAACTCAGCCTGATATCCTTCCCTTG
          1 AGTATTGCGGTGGCTCGTCAAACTGAGGCTGATATCCTTGGCTTG

                  *               *             *        
       1366 AGTATTACGGTGGCTCGTCAAATTGAGGCTGATATCATTGGCTTG
          1 AGTATTGCGGTGGCTCGTCAAACTGAGGCTGATATCCTTGGCTTG

                                          *              
       1411 AGTATTGCGGTGGCTCGTCAAACTGAGGCTAATATCCTTGGCTTG
          1 AGTATTGCGGTGGCTCGTCAAACTGAGGCTGATATCCTTGGCTTG

             
       1456 A
          1 A

       1457 TGAGCTATAC


Statistics
Matches: 78,  Mismatches: 13, Indels: 0
        0.86            0.14        0.00

Matches are distributed among these distances:
  45   78  1.00

ACGTcount: A:0.21, C:0.22, G:0.26, T:0.31


Consensus pattern (45 bp):   
AGTATTGCGGTGGCTCGTCAAACTGAGGCTGATATCCTTGGCTTG
Done.