Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01004337.1 Kokia drynarioides strain JFW-HI SEQ_117668, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 25894
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.35


Found at i:8865 original size:3 final size:3

Alignment explanation


    Indices: 8859--8894  Score: 72
    Period size: 3  Copynumber: 12.0  Consensus size: 3

       8849 TGATAGTAAC

                                                           
       8859 TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT
          1 TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT

       8895 GCATCAATGT


Statistics
Matches: 33,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   3   33  1.00

ACGTcount: A:0.00, C:0.33, G:0.00, T:0.67


Consensus pattern (3 bp):   
TCT

Found at i:23666 original size:18 final size:20

Alignment explanation


    Indices: 23618--23666  Score: 52
    Period size: 18  Copynumber: 2.6  Consensus size: 20

      23608 AATAGATTAT

                      *         
      23618 TGATTAAAT-AATAAATATA
          1 TGATTAAATGGATAAATATA

                                 
      23637 TGA-TAAATTGGATAAA-A-A
          1 TGATTAAA-TGGATAAATATA

                        
      23655 TGATTAAATGGA
          1 TGATTAAATGGA

      23667 AACTTTCAAA


Statistics
Matches: 26,  Mismatches: 1, Indels: 7
        0.76            0.03        0.21

Matches are distributed among these distances:
  18   12  0.46
  19    9  0.35
  20    5  0.19

ACGTcount: A:0.53, C:0.00, G:0.14, T:0.33


Consensus pattern (20 bp):   
TGATTAAATGGATAAATATA
Done.