genome.fa.s4340.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01004340.1 Kokia drynarioides strain JFW-HI SEQ_117674, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  214667

Tables:   1   

This is table  1  of  1  ( 81 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1374--1425	21	2.5	21	81	6	61	30	26	13	28	1.94
1417--1567	50	3.2	50	63	27	128	37	23	11	27	1.90
1462--1517	21	2.6	22	75	5	62	32	25	14	28	1.94
1374--1573	92	2.2	92	96	0	364	36	23	12	28	1.91
4989--5013	2	12.5	2	100	0	50	48	0	0	52	1.00
11215--11450	23	10.3	23	85	0	283	46	11	5	36	1.63
11215--11450	69	3.4	69	86	0	328	46	11	5	36	1.63
16984--17013	6	5.2	6	96	4	53	86	0	13	0	0.57
17000--17061	30	2.1	30	87	6	90	58	11	17	12	1.63
27994--28034	17	2.4	18	80	19	52	48	12	21	17	1.79
39049--39090	13	3.3	12	78	21	50	80	2	2	14	0.90
39051--39090	12	3.1	13	82	10	55	82	2	2	12	0.87
68391--68444	27	2.0	27	100	0	108	40	3	25	29	1.73
68391--68454	27	2.7	23	83	13	69	42	4	23	29	1.74
78171--78196	3	8.7	3	100	0	52	69	0	30	0	0.89
78956--78998	10	4.2	10	85	5	59	81	0	18	0	0.69
78962--79001	21	1.9	21	94	0	71	80	0	20	0	0.72
93027--93072	21	2.2	21	84	7	58	17	32	19	30	1.95
94274--94640	122	3.0	123	90	2	567	43	7	11	37	1.70
101268--101613	117	2.9	119	85	7	468	41	7	11	39	1.69
103432--103519	30	3.0	28	73	14	70	42	14	3	39	1.63
104557--104674	34	3.5	34	80	0	128	32	31	13	22	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
107630--107740	55	2.0	55	98	0	213	29	7	18	44	1.77
113057--113105	8	5.6	9	80	20	50	65	0	2	32	1.04
113027--113109	27	3.1	26	73	19	73	65	1	2	31	1.13
113445--113501	27	2.1	28	83	9	73	31	0	0	68	0.90
113964--114010	22	2.1	23	84	4	60	51	0	2	46	1.13
114332--114377	15	3.1	15	73	17	51	23	6	10	58	1.55
114318--114377	29	2.1	27	87	6	84	26	6	10	56	1.57
114553--114597	22	2.1	22	87	4	65	64	0	28	6	1.19
114545--114603	27	2.1	28	84	9	77	66	0	25	8	1.20
118474--118581	12	9.3	12	74	9	91	8	3	17	70	1.27
118432--118576	68	2.1	69	80	8	163	9	4	17	68	1.32
118453--118525	24	3.1	24	80	2	85	9	4	16	69	1.30
118510--118595	44	2.0	44	84	9	113	9	4	18	67	1.36
118492--118569	32	2.4	30	78	16	75	7	5	17	69	1.32
118473--118596	56	2.2	57	81	4	153	10	3	17	68	1.32
118704--118798	49	2.0	47	83	8	120	27	0	8	64	1.22
124443--124495	27	2.0	27	81	7	63	39	0	18	41	1.51
126282--126313	16	2.1	16	94	5	57	31	12	21	34	1.91
128322--128399	27	2.9	27	94	1	129	34	32	15	17	1.92
128565--128670	33	3.2	33	89	0	158	36	39	11	12	1.79
128762--129049	62	4.8	59	81	8	346	32	7	9	50	1.62
128763--129049	121	2.4	121	90	1	450	32	7	9	50	1.62
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
134179--134372	59	3.3	58	83	7	221	39	8	19	32	1.81
134179--134381	29	6.8	30	77	9	175	39	7	19	32	1.81
140749--141076	164	2.0	164	97	0	620	31	24	14	29	1.95
150897--151006	55	2.0	55	98	0	211	36	8	23	31	1.84
150906--150992	28	3.1	27	66	21	72	36	8	25	29	1.85
157499--157580	40	2.0	40	92	0	137	25	18	23	32	1.97
159669--159716	24	2.0	24	84	11	64	58	0	4	37	1.18
167566--167610	15	3.2	15	78	15	51	51	4	31	13	1.61
169179--169253	24	3.1	24	92	3	116	30	21	20	28	1.98
178600--178643	21	2.1	21	83	8	54	45	2	0	52	1.13
181240--181300	29	2.1	29	81	6	70	14	14	8	62	1.54
181922--181956	18	1.9	18	88	0	52	68	0	11	20	1.20
183677--183738	28	2.2	29	97	2	117	40	11	27	20	1.87
184435--184468	17	1.9	18	88	5	52	38	14	0	47	1.45
188114--188248	48	2.8	48	89	2	182	30	16	20	33	1.94
188233--188284	22	2.4	22	86	0	68	34	17	15	32	1.91
189192--189231	20	2.0	20	85	0	53	65	2	7	25	1.32
189243--189312	29	2.4	30	80	7	90	58	2	11	27	1.47
191145--191606	49	9.4	48	77	9	252	21	26	15	35	1.94
191148--191529	98	3.9	96	78	7	367	21	28	14	35	1.93
191196--191529	146	2.3	146	82	5	370	20	28	15	35	1.93
191780--192362	93	6.2	91	70	16	277	26	20	17	35	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
191673--192279	184	3.2	186	83	4	679	26	20	17	34	1.95
197505--198084	302	1.9	303	95	1	1047	30	15	16	37	1.90
199906--200314	59	7.0	58	74	10	244	36	3	24	34	1.73
199820--200214	29	13.7	29	72	10	238	38	4	23	33	1.75
199986--200195	88	2.4	87	80	6	244	37	4	25	32	1.77
199905--200308	30	13.8	30	75	11	194	37	3	23	35	1.72
200139--200313	88	2.0	89	83	5	221	36	1	24	37	1.66
200192--200304	58	1.9	58	85	3	156	37	0	23	38	1.61
200985--201031	3	15.7	3	95	0	85	31	2	0	65	1.04
201939--202020	6	14.3	6	73	19	68	56	2	1	40	1.20
201939--202049	17	6.5	17	82	6	134	57	4	0	36	1.25
201939--202049	34	3.2	33	89	6	159	57	4	0	36	1.25
202488--203128	39	16.4	39	72	9	349	25	20	30	23	1.99
202479--203004	78	6.7	78	85	0	665	25	21	30	22	1.99
203010--203155	78	1.9	78	86	2	213	26	17	29	27	1.97

Tables:   1

The End!