Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01004342.1 Kokia drynarioides strain JFW-HI SEQ_117677, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 658

Length: 1098
ACGTcount: A:0.38, C:0.18, G:0.16, T:0.28


Found at i:1061 original size:18 final size:17

Alignment explanation


    Indices: 1034--1077  Score: 54
    Period size: 18  Copynumber: 2.6  Consensus size: 17

       1024 TAAACGTTTT

                      *      
       1034 AATAAATAAATATAATA
          1 AATAAATAAACATAATA

                             *
       1051 AATACAATAAACATAATT
          1 AATA-AATAAACATAATA

                      
       1069 AAT-AATAAA
          1 AATAAATAAA

       1078 GGCAAGTCAA


Statistics
Matches: 24,  Mismatches: 2, Indels: 3
        0.83            0.07        0.10

Matches are distributed among these distances:
  16    6  0.25
  17    4  0.17
  18   14  0.58

ACGTcount: A:0.68, C:0.05, G:0.00, T:0.27


Consensus pattern (17 bp):   
AATAAATAAACATAATA
Done.