Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01004349.1 Kokia drynarioides strain JFW-HI SEQ_117689, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3356
ACGTcount: A:0.38, C:0.11, G:0.10, T:0.41


Found at i:1998 original size:18 final size:19

Alignment explanation


    Indices: 1975--2020  Score: 69
    Period size: 18  Copynumber: 2.5  Consensus size: 19

       1965 GGATAAATTT

                               
       1975 TTAATTAAAAAAATTT-AA
          1 TTAATTAAAAAAATTTAAA

                        *      
       1993 TTAATT-AAAAATTTTAAA
          1 TTAATTAAAAAAATTTAAA

                      
       2011 TTAATTAAAA
          1 TTAATTAAAA

       2021 CTGTAAGATA


Statistics
Matches: 25,  Mismatches: 1, Indels: 3
        0.86            0.03        0.10

Matches are distributed among these distances:
  17    8  0.32
  18   14  0.56
  19    3  0.12

ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41


Consensus pattern (19 bp):   
TTAATTAAAAAAATTTAAA

Found at i:2685 original size:2 final size:2

Alignment explanation


    Indices: 2680--2726  Score: 94
    Period size: 2  Copynumber: 23.5  Consensus size: 2

       2670 TTTTTAGTGA

                                                                          
       2680 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
          1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT

                   
       2722 AT AT A
          1 AT AT A

       2727 ATCATATTTC


Statistics
Matches: 45,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   2   45  1.00

ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49


Consensus pattern (2 bp):   
AT

Done.