Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01004360.1 Kokia drynarioides strain JFW-HI SEQ_117712, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 691

Length: 1153
ACGTcount: A:0.33, C:0.12, G:0.14, T:0.41


Found at i:515 original size:44 final size:46

Alignment explanation


    Indices: 465--554  Score: 107
    Period size: 43  Copynumber: 2.0  Consensus size: 46

        455 AAGTTCATTT

                           *                                
        465 ATTTTAAAGCTTAATTTTTTTTAA-AAATAT-TAAAAT-TT-TTAAAA
          1 ATTTT-AAGCTTAA-ATTTTTTAATAAATATGTAAAATATTATTAAAA

                   **                                     
        509 ATTTTAATTTTAAATTTTTTAATAAATATGTAAAATATTATTAAAA
          1 ATTTTAAGCTTAAATTTTTTAATAAATATGTAAAATATTATTAAAA

        555 TGTATTAAAA


Statistics
Matches: 39,  Mismatches: 3, Indels: 6
        0.81            0.06        0.12

Matches are distributed among these distances:
  42    8  0.21
  43   12  0.31
  44   11  0.28
  45    2  0.05
  46    6  0.15

ACGTcount: A:0.47, C:0.01, G:0.02, T:0.50


Consensus pattern (46 bp):   
ATTTTAAGCTTAAATTTTTTAATAAATATGTAAAATATTATTAAAA
Done.