Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01004372.1 Kokia drynarioides strain JFW-HI SEQ_117729, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3205
ACGTcount: A:0.40, C:0.11, G:0.12, T:0.37


Found at i:559 original size:38 final size:38

Alignment explanation


    Indices: 517--593  Score: 154
    Period size: 38  Copynumber: 2.0  Consensus size: 38

        507 TGATTATGAG

                                                  
        517 TATCCAATTGTAATTATAGTTATTTATATTGTATTATA
          1 TATCCAATTGTAATTATAGTTATTTATATTGTATTATA

                                                  
        555 TATCCAATTGTAATTATAGTTATTTATATTGTATTATA
          1 TATCCAATTGTAATTATAGTTATTTATATTGTATTATA

             
        593 T
          1 T

        594 TTGGTATGAA


Statistics
Matches: 39,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  38   39  1.00

ACGTcount: A:0.34, C:0.05, G:0.08, T:0.53


Consensus pattern (38 bp):   
TATCCAATTGTAATTATAGTTATTTATATTGTATTATA
Done.