Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01004376.1 Kokia drynarioides strain JFW-HI SEQ_117745, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2285
ACGTcount: A:0.31, C:0.14, G:0.20, T:0.35


Found at i:1509 original size:3 final size:3

Alignment explanation


    Indices: 1501--1540  Score: 80
    Period size: 3  Copynumber: 13.3  Consensus size: 3

       1491 TTCTTGTCAT

                                                                 
       1501 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA T
          1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA T

       1541 CACCAAATCA


Statistics
Matches: 37,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   3   37  1.00

ACGTcount: A:0.65, C:0.00, G:0.00, T:0.35


Consensus pattern (3 bp):   
TAA

Done.