genome.fa.s4381.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01004381.1 Kokia drynarioides strain JFW-HI SEQ_117754, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  177220

Tables:   1   

This is table  1  of  1  ( 67 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5--114	59	1.9	57	88	3	166	45	0	2	51	1.15
5--130	59	2.2	57	85	5	164	45	0	2	51	1.19
105--161	29	2.1	26	81	12	62	50	8	1	38	1.44
144--204	28	2.2	28	96	0	113	57	9	3	29	1.47
3576--3600	6	4.2	6	100	0	50	16	52	16	16	1.76
6393--6436	21	2.2	20	83	4	52	56	18	13	11	1.66
9260--9569	94	3.3	94	86	2	394	27	17	22	31	1.97
10327--10389	21	3.0	21	90	0	90	33	7	17	41	1.79
14182--14209	13	2.2	13	100	0	56	32	28	25	14	1.94
20745--20785	13	3.1	14	82	10	50	73	4	2	19	1.13
20983--21038	4	14.5	4	78	14	64	73	0	1	25	0.93
22496--22536	12	3.5	11	81	12	55	9	2	21	65	1.34
40855--40947	42	2.2	42	88	3	143	38	5	21	34	1.76
45004--45078	20	3.8	20	73	16	57	20	30	17	32	1.95
45004--45139	40	3.4	40	78	11	109	16	28	18	36	1.93
45043--45151	20	5.5	19	71	14	78	12	30	21	35	1.91
45042--45151	40	2.7	41	83	10	122	12	30	20	36	1.90
45491--45527	19	2.0	19	89	5	58	51	0	0	48	1.00
45494--45584	27	3.6	27	76	14	102	51	0	2	46	1.13
45491--45584	49	2.0	47	87	4	134	50	0	2	47	1.13
45601--45631	6	5.2	6	92	0	53	0	64	0	35	0.94
45592--45628	12	2.8	14	80	16	51	0	67	0	32	0.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45601--45730	68	1.9	67	90	1	206	2	38	7	51	1.43
45793--45826	15	2.3	15	89	0	50	5	26	2	64	1.30
46415--46465	25	2.0	25	92	0	84	49	11	25	13	1.76
46487--46528	20	2.0	22	90	9	70	52	0	0	47	1.00
46478--46534	20	3.0	20	74	23	59	47	1	0	50	1.11
63708--63753	22	2.1	22	88	8	67	23	0	13	63	1.30
73924--73969	24	1.9	24	82	8	58	45	15	10	28	1.79
74604--74646	12	3.6	12	80	0	50	0	37	0	62	0.95
75173--75205	17	1.9	17	88	11	50	0	33	0	66	0.92
84423--84471	24	2.0	24	100	0	98	32	8	28	30	1.86
92319--92347	2	14.5	2	100	0	58	51	0	0	48	1.00
95361--95403	21	1.9	24	86	13	65	46	2	11	39	1.53
105554--105616	12	5.3	12	74	12	51	17	11	4	66	1.39
114416--114443	4	7.0	4	100	0	56	75	0	25	0	0.81
116460--116582	58	2.1	59	86	8	173	24	19	8	47	1.76
117584--117972	206	1.9	207	89	2	604	39	14	12	34	1.83
120037--120280	42	6.0	42	87	5	356	24	18	28	28	1.98
120038--120299	81	3.2	81	95	0	443	24	19	27	29	1.98
120037--120280	123	2.0	121	88	4	364	24	18	28	28	1.98
120239--120360	61	2.0	61	93	3	210	22	18	22	36	1.95
120300--120581	42	7.0	42	78	10	300	24	17	26	31	1.97
120158--120442	142	2.0	142	90	0	453	24	19	25	31	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
120300--120581	81	3.5	81	87	3	399	24	17	26	31	1.97
120090--120520	223	1.9	221	90	1	675	24	19	26	30	1.98
132380--132418	18	2.2	18	86	9	53	46	7	2	43	1.46
132087--132488	204	2.0	206	84	3	535	40	13	11	34	1.80
140218--140279	31	2.0	30	84	9	81	33	14	9	41	1.79
141737--141769	12	2.8	12	90	0	57	3	57	0	39	1.14
142234--142312	39	2.0	39	92	0	131	48	13	15	22	1.80
143374--143423	24	2.1	23	81	3	55	50	2	0	48	1.12
151561--151739	24	7.2	24	67	15	94	18	24	17	38	1.93
151618--151715	52	1.9	51	91	2	160	20	23	16	39	1.91
151650--151834	76	2.4	76	83	0	235	21	24	15	39	1.91
158421--158544	24	5.2	24	92	0	185	18	29	17	33	1.94
158626--158717	24	3.7	24	68	18	71	19	28	16	35	1.93
158517--158725	109	1.9	109	85	0	283	22	22	15	38	1.93
158614--158775	51	3.1	52	85	2	202	22	24	14	38	1.92
161688--161723	18	2.0	18	89	10	56	66	0	0	33	0.92
161686--161726	7	5.9	7	86	8	57	68	0	0	31	0.90
161685--161725	22	1.9	22	95	5	75	68	0	0	31	0.90
169638--169841	26	7.9	25	75	8	167	24	26	20	28	1.99
169709--169842	52	2.6	52	95	0	232	24	26	19	29	1.98
173374--173411	3	12.7	3	100	0	76	68	0	0	31	0.90
174467--174509	22	2.0	22	86	9	61	30	0	20	48	1.50
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
176029--176089	18	3.6	18	80	8	65	65	1	24	8	1.29

Tables:   1

The End!