Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01004384.1 Kokia drynarioides strain JFW-HI SEQ_117759, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 607

Length: 1013
ACGTcount: A:0.29, C:0.28, G:0.10, T:0.33


Found at i:598 original size:59 final size:59

Alignment explanation


    Indices: 477--936  Score: 566
    Period size: 59  Copynumber: 7.9  Consensus size: 59

        467 AAAATTACCA

                 *             *                  *       *            
        477 TTTTACCCCCGAAC--TCCCAAAATTACCATTTTACCCTCGAACTCCCAAAAATCCCAT
          1 TTTTAACCCCGAACTTTCCAAAAATTACCATTTTACCCCCGAACTCTCAAAAATCCCAT

                               *                                          
        534 TTTTAACCCCGAA-TCTTCTAAAAATTACCA-TTTACCCCCTCGAACTCTCAAAAATCCCA-
          1 TTTTAACCCCGAACT-TTCCAAAAATTACCATTTTA-CCCC-CGAACTCTCAAAAATCCCAT

                     **                           *                *    
        593 TTTTAACCCTAAACTTTCCAAAAATTACCA-TTTACCCTCGAACT-TCCAAAAATACCA-
          1 TTTTAACCCCGAACTTTCCAAAAATTACCATTTTACCCCCGAACTCT-CAAAAATCCCAT

                *             *                           *            
        650 TTTTGACCCCGAACTTTCTAAAAATTACCATTTTACCCCCGAACTCCCAAAAATCCCA-
          1 TTTTAACCCCGAACTTTCCAAAAATTACCATTTTACCCCCGAACTCTCAAAAATCCCAT

                  *   *   *                                            
        708 TTTTAAACCCTAACCTTCCAAAAATTACCATTTTACCCCCGAACTCTC-AAAATCCCAT
          1 TTTTAACCCCGAACTTTCCAAAAATTACCATTTTACCCCCGAACTCTCAAAAATCCCAT

                    *                                                   
        766 TTTTAACCTCGAACTTTCCAAAAATTACCATTTTACCCCCGAACT-TCCAAAAATCCCAT
          1 TTTTAACCCCGAACTTTCCAAAAATTACCATTTTACCCCCGAACTCT-CAAAAATCCCAT

                *    **       *                     *                  
        825 TTTTGACCCTAAACTTTCTAAAAATTACCATTTTACCCCCAAACTCTCAAAAATCCCAT
          1 TTTTAACCCCGAACTTTCCAAAAATTACCATTTTACCCCCGAACTCTCAAAAATCCCAT

                          *   *                   *               
        884 TTTTAACCCCGAACCTTCTAAAAATTACCATTTTACCCTCGAACT-TCCAAAAA
          1 TTTTAACCCCGAACTTTCCAAAAATTACCATTTTACCCCCGAACTCT-CAAAAA

        937 AAATCTCATT


Statistics
Matches: 350,  Mismatches: 39, Indels: 26
        0.84            0.09        0.06

Matches are distributed among these distances:
  56    1  0.00
  57   64  0.18
  58  115  0.33
  59  150  0.43
  60   20  0.06

ACGTcount: A:0.35, C:0.33, G:0.03, T:0.29


Consensus pattern (59 bp):   
TTTTAACCCCGAACTTTCCAAAAATTACCATTTTACCCCCGAACTCTCAAAAATCCCAT

Done.