Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01004386.1 Kokia drynarioides strain JFW-HI SEQ_117762, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 683

Length: 1139
ACGTcount: A:0.36, C:0.13, G:0.17, T:0.34


Found at i:670 original size:5 final size:5

Alignment explanation


    Indices: 660--697  Score: 58
    Period size: 5  Copynumber: 7.6  Consensus size: 5

        650 GTTTTTCTTC

                *     *                                  
        660 AAAAA AAAAA AAAAG AAAAG AAAAG AAAAG AAAAG AAA
          1 AAAAG AAAAG AAAAG AAAAG AAAAG AAAAG AAAAG AAA

        698 TACAAGTGTT


Statistics
Matches: 32,  Mismatches: 1, Indels: 0
        0.97            0.03        0.00

Matches are distributed among these distances:
   5   32  1.00

ACGTcount: A:0.87, C:0.00, G:0.13, T:0.00


Consensus pattern (5 bp):   
AAAAG

Done.