genome.fa.s4387.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01004387.1 Kokia drynarioides strain JFW-HI SEQ_117763, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  62776

Tables:   1   

This is table  1  of  1  ( 33 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
823--894	35	2.1	35	89	0	108	43	2	38	15	1.61
842--896	17	3.2	17	74	23	60	45	3	36	14	1.63
3841--3878	19	2.0	19	100	0	76	15	31	31	21	1.94
11977--12001	10	2.5	10	100	0	50	40	0	8	52	1.31
15756--15961	105	2.0	105	84	3	272	34	13	23	28	1.93
18955--19013	26	2.3	26	96	0	109	33	3	13	49	1.59
20711--20924	109	2.0	109	87	5	308	43	14	8	33	1.75
23038--23279	45	5.4	46	82	4	241	26	18	22	32	1.97
26597--26819	105	2.1	104	87	3	313	33	12	23	30	1.92
31937--32009	18	4.2	16	78	15	65	43	2	1	52	1.24
31952--31995	6	7.5	6	84	5	63	47	0	2	50	1.13
31937--31994	12	5.0	11	75	24	57	43	1	1	53	1.21
32758--32844	3	29.0	3	77	13	63	56	0	6	36	1.26
32749--32847	30	3.3	30	78	7	94	56	1	7	35	1.33
33989--34088	29	3.4	29	77	8	112	41	22	2	35	1.65
33989--34089	30	3.4	30	77	9	109	41	21	1	34	1.65
34033--34104	30	2.4	29	84	8	83	38	29	1	30	1.66
34052--34189	59	2.3	59	82	0	150	34	23	7	34	1.83
34097--34221	59	2.1	59	89	1	198	28	24	8	40	1.83
36216--36255	15	2.7	15	88	0	62	82	10	2	5	0.91
36255--36315	30	2.0	30	100	0	122	47	3	19	29	1.65
36342--36381	19	2.2	18	86	4	53	77	7	5	10	1.11
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39292--39350	24	2.5	24	88	0	91	33	25	18	22	1.96
43475--43525	24	2.1	24	92	0	84	19	11	11	56	1.65
43485--43537	24	2.2	24	89	0	79	22	15	11	50	1.75
45396--45450	24	2.3	24	90	0	83	27	12	10	49	1.74
47408--47448	23	1.9	22	85	14	59	48	0	17	34	1.47
47925--48000	20	3.6	21	76	10	75	67	2	0	30	1.05
49872--50060	60	3.2	59	85	4	236	23	18	13	44	1.85
50271--50340	28	2.5	28	83	6	88	42	15	17	24	1.88
50326--50406	32	2.6	31	78	5	83	45	11	16	27	1.80
50789--50836	21	2.2	22	85	3	62	47	4	2	45	1.33
51424--51449	13	2.0	13	100	0	52	61	0	0	38	0.96

Tables:   1

The End!