Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01000439.1 Kokia drynarioides strain JFW-HI SEQ_111277, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4550
ACGTcount: A:0.34, C:0.16, G:0.15, T:0.35


Found at i:2156 original size:13 final size:13

Alignment explanation


    Indices: 2138--2162  Score: 50
    Period size: 13  Copynumber: 1.9  Consensus size: 13

       2128 ATGGAAAAAC

                         
       2138 AAAAAAAAACAAA
          1 AAAAAAAAACAAA

                        
       2151 AAAAAAAAACAA
          1 AAAAAAAAACAA

       2163 TGTGCTAGGG


Statistics
Matches: 12,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  13   12  1.00

ACGTcount: A:0.92, C:0.08, G:0.00, T:0.00


Consensus pattern (13 bp):   
AAAAAAAAACAAA

Found at i:2157 original size:11 final size:10

Alignment explanation


    Indices: 2132--2156  Score: 50
    Period size: 10  Copynumber: 2.5  Consensus size: 10

       2122 TATACAATGG

                      
       2132 AAAAACAAAA
          1 AAAAACAAAA

                      
       2142 AAAAACAAAA
          1 AAAAACAAAA

                 
       2152 AAAAA
          1 AAAAA

       2157 AAACAATGTG


Statistics
Matches: 15,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  10   15  1.00

ACGTcount: A:0.92, C:0.08, G:0.00, T:0.00


Consensus pattern (10 bp):   
AAAAACAAAA
Done.