Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01004395.1 Kokia drynarioides strain JFW-HI SEQ_117771, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4374
ACGTcount: A:0.34, C:0.20, G:0.17, T:0.30


Found at i:109 original size:14 final size:14

Alignment explanation


    Indices: 82--120  Score: 53
    Period size: 14  Copynumber: 2.8  Consensus size: 14

         72 TTTTTTTCCT

                           
         82 TCTTTCTTTC-TTTC
          1 TCTTT-TTTCTTTTC

                          
         96 TCTTTTTTCTTTTC
          1 TCTTTTTTCTTTTC

             *         
        110 TTTTTTTTCTT
          1 TCTTTTTTCTT

        121 CAATTTTGTT


Statistics
Matches: 23,  Mismatches: 1, Indels: 2
        0.88            0.04        0.08

Matches are distributed among these distances:
  13    4  0.17
  14   19  0.83

ACGTcount: A:0.00, C:0.21, G:0.00, T:0.79


Consensus pattern (14 bp):   
TCTTTTTTCTTTTC

Found at i:113 original size:12 final size:12

Alignment explanation


    Indices: 81--115  Score: 52
    Period size: 12  Copynumber: 2.8  Consensus size: 12

         71 TTTTTTTTCC

                         
         81 TTCTTTCTTTCTT
          1 TTCTTT-TTTCTT

                         
         94 TCTCTTTTTTCTT
          1 T-TCTTTTTTCTT

                     
        107 TTCTTTTTT
          1 TTCTTTTTT

        116 TTCTTCAATT


Statistics
Matches: 21,  Mismatches: 0, Indels: 3
        0.88            0.00        0.12

Matches are distributed among these distances:
  12    8  0.38
  13    8  0.38
  14    5  0.24

ACGTcount: A:0.00, C:0.20, G:0.00, T:0.80


Consensus pattern (12 bp):   
TTCTTTTTTCTT
Done.