Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01004397.1 Kokia drynarioides strain JFW-HI SEQ_117774, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4907
ACGTcount: A:0.33, C:0.19, G:0.14, T:0.34


Found at i:2450 original size:13 final size:13

Alignment explanation


    Indices: 2407--2466  Score: 61
    Period size: 13  Copynumber: 4.5  Consensus size: 13

       2397 GTATAAAAAC

                      *  
       2407 TTCATATAATTAT
          1 TTCATATAATCAT

                        *  
       2420 TTCCATATAACTGA-
          1 TT-CATATAA-TCAT

                          
       2434 TTCATATAGA-CAT
          1 TTCATATA-ATCAT

                         
       2447 TTCATATAATCAT
          1 TTCATATAATCAT

                   
       2460 TTCATAT
          1 TTCATAT

       2467 CCTTAACACA


Statistics
Matches: 40,  Mismatches: 2, Indels: 10
        0.77            0.04        0.19

Matches are distributed among these distances:
  12    2  0.05
  13   26  0.65
  14   10  0.25
  15    2  0.05

ACGTcount: A:0.37, C:0.15, G:0.03, T:0.45


Consensus pattern (13 bp):   
TTCATATAATCAT
Done.