Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01004402.1 Kokia drynarioides strain JFW-HI SEQ_117781, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 661

Length: 1103
ACGTcount: A:0.35, C:0.16, G:0.14, T:0.36


Found at i:862 original size:68 final size:69

Alignment explanation


    Indices: 774--915  Score: 277
    Period size: 68  Copynumber: 2.1  Consensus size: 69

        764 ATTGAATTTA

                                                                             
        774 TTTAATATTCTTAATATGATATATTTATGTGTTTAAAGTTTGATTTACTCAAAGTTTAGTTTTTT
          1 TTTAATATTCTTAATATGATATATTTATGTGTTTAAAGTTTGATTTACTCAAAGTTTAGTTTTTT

                
        839 TAAT
         66 TAAT

                                                                             
        843 TTTAA-ATTCTTAATATGATATATTTATGTGTTTAAAGTTTGATTTACTCAAAGTTTAGTTTTTT
          1 TTTAATATTCTTAATATGATATATTTATGTGTTTAAAGTTTGATTTACTCAAAGTTTAGTTTTTT

                
        907 TAAT
         66 TAAT

                 
        911 TTTAA
          1 TTTAA

        916 GAGCCTCTCA


Statistics
Matches: 73,  Mismatches: 0, Indels: 1
        0.99            0.00        0.01

Matches are distributed among these distances:
  68   68  0.93
  69    5  0.07

ACGTcount: A:0.31, C:0.04, G:0.10, T:0.55


Consensus pattern (69 bp):   
TTTAATATTCTTAATATGATATATTTATGTGTTTAAAGTTTGATTTACTCAAAGTTTAGTTTTTT
TAAT
Done.