Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01004406.1 Kokia drynarioides strain JFW-HI SEQ_117786, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 668

Length: 1114
ACGTcount: A:0.32, C:0.13, G:0.17, T:0.37


Found at i:121 original size:10 final size:9

Alignment explanation


    Indices: 98--124  Score: 54
    Period size: 9  Copynumber: 3.0  Consensus size: 9

         88 GAAAAACGTA

                     
         98 ATTTTTAGG
          1 ATTTTTAGG

                     
        107 ATTTTTAGG
          1 ATTTTTAGG

                     
        116 ATTTTTAGG
          1 ATTTTTAGG

        125 CAATCTAAGA


Statistics
Matches: 18,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   9   18  1.00

ACGTcount: A:0.22, C:0.00, G:0.22, T:0.56


Consensus pattern (9 bp):   
ATTTTTAGG
Done.