Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01004418.1 Kokia drynarioides strain JFW-HI SEQ_117799, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3081
ACGTcount: A:0.37, C:0.14, G:0.13, T:0.36


Found at i:1875 original size:16 final size:17

Alignment explanation


    Indices: 1841--1884  Score: 58
    Period size: 16  Copynumber: 2.8  Consensus size: 17

       1831 TCTATTTGTA

                             
       1841 TTATT-TACT-TATATC
          1 TTATTATACTATATATC

                             
       1856 TTATTATACTATATAT-
          1 TTATTATACTATATATC

                    *    
       1872 TTATTATATTATA
          1 TTATTATACTATA

       1885 CGCATCATAA


Statistics
Matches: 26,  Mismatches: 1, Indels: 3
        0.87            0.03        0.10

Matches are distributed among these distances:
  15    5  0.19
  16   16  0.62
  17    5  0.19

ACGTcount: A:0.34, C:0.07, G:0.00, T:0.59


Consensus pattern (17 bp):   
TTATTATACTATATATC
Done.