Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01004430.1 Kokia drynarioides strain JFW-HI SEQ_117818, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 9264
ACGTcount: A:0.35, C:0.15, G:0.15, T:0.34

Warning! 34 characters in sequence are not A, C, G, or T


Found at i:356 original size:29 final size:29

Alignment explanation


    Indices: 324--404  Score: 71
    Period size: 28  Copynumber: 2.8  Consensus size: 29

        314 CAAAAATAGG

                                           
        324 ATTTTTAGCAA-CTCGAGGG-TAAAATGGTA
          1 ATTTTT-GCAAGCTCG-GGGATAAAATGGTA

                   *   *                 
        353 A-TTTTGGAAGTTCGGGGATAAAATGGTA
          1 ATTTTTGCAAGCTCGGGGATAAAATGGTA

                   *    *            
        381 ATTTTTGGAAGGTTCGGGG-TAAAA
          1 ATTTTTGCAA-GCTCGGGGATAAAA

        405 AATAAGGGTT


Statistics
Matches: 46,  Mismatches: 2, Indels: 8
        0.82            0.04        0.14

Matches are distributed among these distances:
  27    6  0.13
  28   18  0.39
  29   14  0.30
  30    8  0.17

ACGTcount: A:0.32, C:0.06, G:0.30, T:0.32


Consensus pattern (29 bp):   
ATTTTTGCAAGCTCGGGGATAAAATGGTA

Found at i:2808 original size:17 final size:17

Alignment explanation


    Indices: 2782--2815  Score: 50
    Period size: 17  Copynumber: 2.0  Consensus size: 17

       2772 ATGGTTTCGC

                 *           
       2782 ATATTTTTAAAATTTTT
          1 ATATTATTAAAATTTTT

                      *      
       2799 ATATTATTAATATTTTT
          1 ATATTATTAAAATTTTT

       2816 CCAGTGTTTC


Statistics
Matches: 15,  Mismatches: 2, Indels: 0
        0.88            0.12        0.00

Matches are distributed among these distances:
  17   15  1.00

ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65


Consensus pattern (17 bp):   
ATATTATTAAAATTTTT
Done.