Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01004433.1 Kokia drynarioides strain JFW-HI SEQ_117826, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3647
ACGTcount: A:0.30, C:0.19, G:0.19, T:0.32


Found at i:66 original size:21 final size:21

Alignment explanation


    Indices: 42--100  Score: 73
    Period size: 21  Copynumber: 2.8  Consensus size: 21

         32 TCAGGCTATA

                 *      *        
         42 GCTCACCACAAGTTTGTTGTG
          1 GCTCAACACAAGGTTGTTGTG

                      *  *       
         63 GCTCAACACAGGGCTGTTGTG
          1 GCTCAACACAAGGTTGTTGTG

               *             
         84 GCTTAACACAAGGTTGT
          1 GCTCAACACAAGGTTGT

        101 GTGTTGCAAT


Statistics
Matches: 31,  Mismatches: 7, Indels: 0
        0.82            0.18        0.00

Matches are distributed among these distances:
  21   31  1.00

ACGTcount: A:0.22, C:0.22, G:0.27, T:0.29


Consensus pattern (21 bp):   
GCTCAACACAAGGTTGTTGTG

Found at i:127 original size:21 final size:21

Alignment explanation


    Indices: 101--146  Score: 56
    Period size: 21  Copynumber: 2.2  Consensus size: 21

         91 ACAAGGTTGT

                     *           
        101 GTGTTGCAATACGGACATTGG
          1 GTGTTGCAACACGGACATTGG

                   **           *
        122 GTGTTGCGCCACGGACATTGT
          1 GTGTTGCAACACGGACATTGG

                
        143 GTGT
          1 GTGT

        147 CATGCCACGC


Statistics
Matches: 21,  Mismatches: 4, Indels: 0
        0.84            0.16        0.00

Matches are distributed among these distances:
  21   21  1.00

ACGTcount: A:0.17, C:0.17, G:0.35, T:0.30


Consensus pattern (21 bp):   
GTGTTGCAACACGGACATTGG

Found at i:153 original size:21 final size:21

Alignment explanation


    Indices: 111--155  Score: 54
    Period size: 21  Copynumber: 2.1  Consensus size: 21

        101 GTGTTGCAAT

                           **    
        111 ACGGACATTGGGTGTTGCGCC
          1 ACGGACATTGGGTGTCACGCC

                      *      *   
        132 ACGGACATTGTGTGTCATGCC
          1 ACGGACATTGGGTGTCACGCC

               
        153 ACG
          1 ACG

        156 CAAGGCATTT


Statistics
Matches: 20,  Mismatches: 4, Indels: 0
        0.83            0.17        0.00

Matches are distributed among these distances:
  21   20  1.00

ACGTcount: A:0.18, C:0.24, G:0.33, T:0.24


Consensus pattern (21 bp):   
ACGGACATTGGGTGTCACGCC
Done.