Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01004434.1 Kokia drynarioides strain JFW-HI SEQ_117827, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3642
ACGTcount: A:0.30, C:0.19, G:0.19, T:0.32


Found at i:66 original size:21 final size:21

Alignment explanation


    Indices: 42--100  Score: 73
    Period size: 21  Copynumber: 2.8  Consensus size: 21

         32 TCAGGCTATA

                 *      *        
         42 GCTCACCACAAGTTTGTTGTG
          1 GCTCAACACAAGGTTGTTGTG

                      *  *       
         63 GCTCAACACAGGGCTGTTGTG
          1 GCTCAACACAAGGTTGTTGTG

               *             
         84 GCTTAACACAAGGTTGT
          1 GCTCAACACAAGGTTGT

        101 GTGTTGCAAT


Statistics
Matches: 31,  Mismatches: 7, Indels: 0
        0.82            0.18        0.00

Matches are distributed among these distances:
  21   31  1.00

ACGTcount: A:0.22, C:0.22, G:0.27, T:0.29


Consensus pattern (21 bp):   
GCTCAACACAAGGTTGTTGTG

Found at i:121 original size:21 final size:21

Alignment explanation


    Indices: 97--146  Score: 64
    Period size: 21  Copynumber: 2.4  Consensus size: 21

         87 TAACACAAGG

                         *       
         97 TTGTGTGTTGCAATACGGACA
          1 TTGTGTGTTGCAACACGGACA

                       **        
        118 TTGTGTGTTGCGCCACGGACA
          1 TTGTGTGTTGCAACACGGACA

             *      
        139 TCGTGTGT
          1 TTGTGTGT

        147 CATGCCACAC


Statistics
Matches: 25,  Mismatches: 4, Indels: 0
        0.86            0.14        0.00

Matches are distributed among these distances:
  21   25  1.00

ACGTcount: A:0.16, C:0.18, G:0.32, T:0.34


Consensus pattern (21 bp):   
TTGTGTGTTGCAACACGGACA

Found at i:153 original size:21 final size:21

Alignment explanation


    Indices: 111--154  Score: 52
    Period size: 21  Copynumber: 2.1  Consensus size: 21

        101 GTGTTGCAAT

                    *      **    
        111 ACGGACATTGTGTGTTGCGCC
          1 ACGGACATCGTGTGTCACGCC

                             *   
        132 ACGGACATCGTGTGTCATGCC
          1 ACGGACATCGTGTGTCACGCC

              
        153 AC
          1 AC

        155 ACAAGGCATT


Statistics
Matches: 19,  Mismatches: 4, Indels: 0
        0.83            0.17        0.00

Matches are distributed among these distances:
  21   19  1.00

ACGTcount: A:0.18, C:0.27, G:0.30, T:0.25


Consensus pattern (21 bp):   
ACGGACATCGTGTGTCACGCC
Done.