Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01000444.1 Kokia drynarioides strain JFW-HI SEQ_111292, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 853

Length: 1423
ACGTcount: A:0.33, C:0.20, G:0.17, T:0.31


Found at i:146 original size:29 final size:29

Alignment explanation


    Indices: 93--148  Score: 85
    Period size: 29  Copynumber: 1.9  Consensus size: 29

         83 CCGTTACGGC

                         *   *           
         93 CTCAACCTTTCCCTTCATATCTTCATGGT
          1 CTCAACCTTTCCCATCACATCTTCATGGT

                                *      
        122 CTCAACCTTTCCCATCACATTTTCATG
          1 CTCAACCTTTCCCATCACATCTTCATG

        149 ATACCGGGTT


Statistics
Matches: 24,  Mismatches: 3, Indels: 0
        0.89            0.11        0.00

Matches are distributed among these distances:
  29   24  1.00

ACGTcount: A:0.20, C:0.36, G:0.05, T:0.39


Consensus pattern (29 bp):   
CTCAACCTTTCCCATCACATCTTCATGGT
Done.