Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01004442.1 Kokia drynarioides strain JFW-HI SEQ_117839, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 8291
ACGTcount: A:0.33, C:0.14, G:0.21, T:0.31


Found at i:7640 original size:51 final size:50

Alignment explanation


    Indices: 7567--7799  Score: 263
    Period size: 51  Copynumber: 4.6  Consensus size: 50

       7557 TAAACGAAAG

                             *                         *       
       7567 GGTCCGATGACTAAGTGACATCGTGAGTGAATGAATCCTTTACAGATTAAA
          1 GGTCCGATGACTAAGTGTCATCGTGAGT-AATGAATCCTTTACGGATTAAA

                *                   *                  *       
       7618 GGTCTGATGACTAAGTGTCATCGTAAGTAAATGAATCCTTTACTGATTAAA
          1 GGTCCGATGACTAAGTGTCATCGTGAGT-AATGAATCCTTTACGGATTAAA

            *    *                                * * *        
       7669 AGTCCAATGACTAAGTGTCATCGTGAGTAGATGAATCCATGATGGATTAAA
          1 GGTCCGATGACTAAGTGTCATCGTGAGTA-ATGAATCCTTTACGGATTAAA

                        *                          *      **    
       7720 GGTCCGATGACTCAGTGTCATCGTGAGT-ATGAATTCCTATACGGAACAAGA
          1 GGTCCGATGACTAAGTGTCATCGTGAGTAATGAA-TCCTTTACGGATTAA-A

                               *          
       7771 GGTCCGATGACTATA-TGTTATCGTGAGTA
          1 GGTCCGATGACTA-AGTGTCATCGTGAGTA

       7800 TTAAATAAAA


Statistics
Matches: 153,  Mismatches: 24, Indels: 9
        0.82            0.13        0.05

Matches are distributed among these distances:
  49    5  0.03
  50   10  0.07
  51  137  0.90
  52    1  0.01

ACGTcount: A:0.32, C:0.15, G:0.24, T:0.29


Consensus pattern (50 bp):   
GGTCCGATGACTAAGTGTCATCGTGAGTAATGAATCCTTTACGGATTAAA

Done.