Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01004447.1 Kokia drynarioides strain JFW-HI SEQ_117849, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 6552
ACGTcount: A:0.37, C:0.14, G:0.14, T:0.35


Found at i:5769 original size:17 final size:17

Alignment explanation


    Indices: 5735--5784  Score: 64
    Period size: 17  Copynumber: 2.9  Consensus size: 17

       5725 GCCAAACAAA

                  *    * *   
       5735 TTTAAAGTTAAGTCTAT
          1 TTTAAATTTAAATTTAT

                             
       5752 TTTAAATTTAAATTTAT
          1 TTTAAATTTAAATTTAT

             *              
       5769 TATAAATTTAAATTTA
          1 TTTAAATTTAAATTTA

       5785 AAATTTATTT


Statistics
Matches: 29,  Mismatches: 4, Indels: 0
        0.88            0.12        0.00

Matches are distributed among these distances:
  17   29  1.00

ACGTcount: A:0.42, C:0.02, G:0.04, T:0.52


Consensus pattern (17 bp):   
TTTAAATTTAAATTTAT

Found at i:5778 original size:23 final size:23

Alignment explanation


    Indices: 5752--5798  Score: 78
    Period size: 23  Copynumber: 2.0  Consensus size: 23

       5742 TTAAGTCTAT

                                    
       5752 TTTAAATTT-AAATTTATTATAAA
          1 TTTAAATTTAAAATTTATT-TAAA

                                   
       5775 TTTAAATTTAAAATTTATTTAAA
          1 TTTAAATTTAAAATTTATTTAAA

             
       5798 T
          1 T

       5799 AATGCTCAAA


Statistics
Matches: 23,  Mismatches: 0, Indels: 2
        0.92            0.00        0.08

Matches are distributed among these distances:
  23   14  0.61
  24    9  0.39

ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53


Consensus pattern (23 bp):   
TTTAAATTTAAAATTTATTTAAA
Done.