Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NTFQ01004451.1 Kokia drynarioides strain JFW-HI SEQ_117855, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 95112
ACGTcount: A:0.34, C:0.15, G:0.16, T:0.34
Warning! 37 characters in sequence are not A, C, G, or T
Found at i:12863 original size:6 final size:6
Alignment explanation
Indices: 12852--12877 Score: 52
Period size: 6 Copynumber: 4.3 Consensus size: 6
12842 ATATCGTCTC
12852 TCGGAT TCGGAT TCGGAT TCGGAT TC
1 TCGGAT TCGGAT TCGGAT TCGGAT TC
12878 CAGCAGCGGT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 20 1.00
ACGTcount: A:0.15, C:0.19, G:0.31, T:0.35
Consensus pattern (6 bp):
TCGGAT
Found at i:13412 original size:3 final size:3
Alignment explanation
Indices: 13404--13429 Score: 52
Period size: 3 Copynumber: 8.7 Consensus size: 3
13394 TTTATCCTTG
13404 GAT GAT GAT GAT GAT GAT GAT GAT GA
1 GAT GAT GAT GAT GAT GAT GAT GAT GA
13430 AATCAGCAAT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 23 1.00
ACGTcount: A:0.35, C:0.00, G:0.35, T:0.31
Consensus pattern (3 bp):
GAT
Found at i:23886 original size:7 final size:7
Alignment explanation
Indices: 23874--23905 Score: 57
Period size: 7 Copynumber: 4.7 Consensus size: 7
23864 ATAATTCATT
23874 TTTTTTC
1 TTTTTTC
23881 TTTTTTC
1 TTTTTTC
23888 TTTTTT-
1 TTTTTTC
23894 TTTTTTC
1 TTTTTTC
23901 TTTTT
1 TTTTT
23906 GTGAATAAAC
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
6 6 0.25
7 18 0.75
ACGTcount: A:0.00, C:0.09, G:0.00, T:0.91
Consensus pattern (7 bp):
TTTTTTC
Found at i:23897 original size:13 final size:14
Alignment explanation
Indices: 23874--23905 Score: 57
Period size: 13 Copynumber: 2.4 Consensus size: 14
23864 ATAATTCATT
23874 TTTTTTCTTTTTTC
1 TTTTTTCTTTTTTC
23888 TTTTTT-TTTTTTC
1 TTTTTTCTTTTTTC
23901 TTTTT
1 TTTTT
23906 GTGAATAAAC
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
13 12 0.67
14 6 0.33
ACGTcount: A:0.00, C:0.09, G:0.00, T:0.91
Consensus pattern (14 bp):
TTTTTTCTTTTTTC
Found at i:33626 original size:9 final size:9
Alignment explanation
Indices: 33614--33673 Score: 50
Period size: 9 Copynumber: 6.3 Consensus size: 9
33604 ATAAAGTATT
33614 TAAAATTTA
1 TAAAATTTA
33623 TAAAATTTA
1 TAAAATTTA
**
33632 TTAAAAATAGA
1 -T-AAAATTTA
*
33643 GAAAATTTA
1 TAAAATTTA
33652 T-AAATTTA
1 TAAAATTTA
33660 TTAAAAATTTA
1 -T-AAAATTTA
33671 TAA
1 TAA
33674 GTAATTTTAA
Statistics
Matches: 40, Mismatches: 6, Indels: 10
0.71 0.11 0.18
Matches are distributed among these distances:
8 7 0.17
9 18 0.45
10 2 0.05
11 13 0.32
ACGTcount: A:0.57, C:0.00, G:0.03, T:0.40
Consensus pattern (9 bp):
TAAAATTTA
Found at i:34875 original size:22 final size:24
Alignment explanation
Indices: 34850--34893 Score: 65
Period size: 22 Copynumber: 1.9 Consensus size: 24
34840 ATATTATCGT
34850 ATTTAAT-TTATT-TGAAAATAAA
1 ATTTAATATTATTGTGAAAATAAA
*
34872 ATTTAATATTATTGTTAAAATA
1 ATTTAATATTATTGTGAAAATA
34894 TATAATTATA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
22 7 0.37
23 5 0.26
24 7 0.37
ACGTcount: A:0.48, C:0.00, G:0.05, T:0.48
Consensus pattern (24 bp):
ATTTAATATTATTGTGAAAATAAA
Found at i:35171 original size:19 final size:20
Alignment explanation
Indices: 35149--35190 Score: 59
Period size: 19 Copynumber: 2.1 Consensus size: 20
35139 TTTTAAGTAG
35149 AATAGAATAAATAAAAT-TT
1 AATAGAATAAATAAAATGTT
* *
35168 AATATAATAAATTAAATGTT
1 AATAGAATAAATAAAATGTT
35188 AAT
1 AAT
35191 TTTACTCAAC
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
19 15 0.75
20 5 0.25
ACGTcount: A:0.60, C:0.00, G:0.05, T:0.36
Consensus pattern (20 bp):
AATAGAATAAATAAAATGTT
Found at i:54415 original size:60 final size:57
Alignment explanation
Indices: 54351--54574 Score: 179
Period size: 60 Copynumber: 3.7 Consensus size: 57
54341 AAAAAATTAT
*
54351 TCAAATTTTTGGATGTTGGTCATGTAATAGTCGACACCCCTATTTATATGATAAAAAAAA
1 TCAAATTTTTGG-TGTTGGTCATGTAAT-GCCGACACCCCT-TTTATATGATAAAAAAAA
* * * *
54411 TCAAATTTTTGGGTGTTGGTCATGCAATGGCCGACA-CTCTTTTTTCA-GATAAAAAAATT
1 TCAAATTTTT-GGTGTTGGTCATGTAAT-GCCGACACCCCTTTTAT-ATGATAAAAAAA-A
* * * * *
54470 TCAAATTTTTTTGGTGTTGGACAT-TGCATGACCGACACCCCTTTTTATCTGA-ATAAAAAC
1 TCAAA--TTTTTGGTGTTGGTCATGT-AATG-CCGACACCCC-TTTTATATGATAAAAAAAA
54530 TCAAATTTTTAGGTGTTGGTCATGCT-ATGGCCGACACCCCCTTTT
1 TCAAATTTTT-GGTGTTGGTCATG-TAAT-GCCGACA-CCCCTTTT
54575 TAACCTGATA
Statistics
Matches: 134, Mismatches: 15, Indels: 31
0.74 0.08 0.17
Matches are distributed among these distances:
58 19 0.14
59 33 0.25
60 59 0.44
61 16 0.12
62 7 0.05
ACGTcount: A:0.29, C:0.18, G:0.17, T:0.37
Consensus pattern (57 bp):
TCAAATTTTTGGTGTTGGTCATGTAATGCCGACACCCCTTTTATATGATAAAAAAAA
Found at i:54553 original size:119 final size:118
Alignment explanation
Indices: 54382--54926 Score: 394
Period size: 119 Copynumber: 4.5 Consensus size: 118
54372 ATGTAATAGT
* * * *
54382 CGACACCCCTATTTATATGATAAAAAAAATCAAATTTTTGGGTGTTGGTCATGCAATGGCCGACA
1 CGACACCCCTTTTTATCTGA-ATAAAAAATCAAATTTTTTGGTGTTGGTCATGCAATGGCCGACA
*
54447 -CTCTTTTT-TCAGATAAAAAAATTTCAAATTTTTTTGGTGTTGGACATTGCATGAC
65 CCCCTTTTTATCAGAT-AAAAAATTTC-AA-TTTTTTGGTGTTGGACATTGCATGAC
* * *
54502 CGACACCCCTTTTTATCTGAATAAAAACTCAAATTTTTAGGTGTTGGTCATGCTATGGCCGACAC
1 CGACACCCCTTTTTATCTGAATAAAAAATCAAATTTTTTGGTGTTGGTCATGCAATGGCCGACA-
* * * * ** * **
54567 CCCCTTTTTAACCTGATACAAAA--TCATTTTTTTTTTGTT-GACCA-TACAATGGT
65 CCCCTTTTT-ATCAGATAAAAAATTTCAATTTTTTGGTGTTGGA-CATTGC-ATGAC
* * * * ** * **
54620 TGACACTCCCTTTTTGTC-AAATAAAAAAATTAAA-TTTTTGGTGTAAGCCATTGC-ATGAACGA
1 CGACAC-CCCTTTTTATCTGAAT-AAAAAATCAAATTTTTTGGTGTTGGTCA-TGCAATGGCCGA
* * ***
54682 CACCCCCTTTTTTATCTTG-TAAAAAAAATTCAAATTTTTTGTGTGTTACCCATTGCATGAC
63 CA-CCCC-TTTTTATC-AGAT-AAAAAATTTC-AATTTTTTG-GTGTTGGACATTGCATGAC
* * * * *
54743 CGACACTCCTTTTTATCTGAATAAAAAAAATCAAATTTTTTGGTGTTGATCATGCCATAGTCGAC
1 CGACACCCCTTTTTATCTGAAT--AAAAAATCAAATTTTTTGGTGTTGGTCATGCAATGGCCGAC
** * *
54808 ACCATTTTTTTGTCAGATAAAAAATTT-AATTTTTTGGTGTTGGCCATTGCATGAC
64 ACC-CCTTTTTATCAGATAAAAAATTTCAATTTTTTGGTGTTGGACATTGCATGAC
* * * * ** *
54863 CGACACCCCTATTTATTTGATAAAAAAAATC-AATTTTTTTGTGTTGACCATGCAATGACCGACA
1 CGACACCCCTTTTTATCTGA-ATAAAAAATCAAATTTTTTGGTGTTGGTCATGCAATGGCCGACA
54927 TCAACTTTTT
Statistics
Matches: 334, Mismatches: 66, Indels: 52
0.74 0.15 0.12
Matches are distributed among these distances:
117 4 0.01
118 78 0.23
119 83 0.25
120 54 0.16
121 19 0.06
122 21 0.06
123 30 0.09
124 26 0.08
125 19 0.06
ACGTcount: A:0.31, C:0.18, G:0.14, T:0.37
Consensus pattern (118 bp):
CGACACCCCTTTTTATCTGAATAAAAAATCAAATTTTTTGGTGTTGGTCATGCAATGGCCGACAC
CCCTTTTTATCAGATAAAAAATTTCAATTTTTTGGTGTTGGACATTGCATGAC
Found at i:54575 original size:60 final size:58
Alignment explanation
Indices: 54351--54926 Score: 328
Period size: 59 Copynumber: 9.6 Consensus size: 58
54341 AAAAAATTAT
* * * * * * *
54351 TCAAA-TTTTTGGATGTTGGTCATGTAATAGTCGACACCCCTATTTATATGATAAAAAAAA
1 TCAAATTTTTTGG-TGTTGGCCATG-CATGGCCGACACCCCTTTTTATCTGA-ATAAAAAA
* * * *
54411 TCAAATTTTTGGGTGTTGGTCATGCAATGGCCGACA-CTCTTTTT-TCAG-ATAAAAAAA
1 TCAAATTTTTTGGTGTTGGCCATGC-ATGGCCGACACCCCTTTTTATCTGAAT-AAAAAA
* * *
54468 TTTCAAATTTTTTTGGTGTTGGACATTGCATGACCGACACCCCTTTTTATCTGAATAAAAAC
1 --TCAAA-TTTTTTGGTGTTGGCCA-TGCATGGCCGACACCCCTTTTTATCTGAATAAAAAA
* * * *
54530 TCAAATTTTTAGGTGTTGGTCATGCTATGGCCGACACCCCCTTTTTAACCTG-ATACAAAA
1 TCAAATTTTTTGGTGTTGGCCATGC-ATGGCCGACA-CCCCTTTTT-ATCTGAATAAAAAA
* ** * * ** * *
54590 TC-ATTTTTTTTTTGTTGACCATACAATGGTTGACACTCCCTTTTTGTC-AAATAAAAAAA
1 TCAAATTTTTTGGTGTTGGCCATGC-ATGGCCGACAC-CCCTTTTTATCTGAAT-AAAAAA
* ** **
54649 TTAAA-TTTTTGGTGTAAGCCATTGCATGAACGACACCCCCTTTTTTATCTTGTAA-AAAAAA
1 TCAAATTTTTTGGTGTTGGCCA-TGCATGGCCGACA-CCCC-TTTTTATC-TG-AATAAAAAA
** * *
54710 TTCAAATTTTTTGTGTGTTACCCATTGCATGACCGACACTCCTTTTTATCTGAATAAAAAAAA
1 -TCAAATTTTTTG-GTGTTGGCCA-TGCATGGCCGACACCCCTTTTTATCTGAAT--AAAAAA
** * * * * * *
54773 TCAAATTTTTTGGTGTTGATCATGCCATAGTCGACA-CCATTTTTTTGTCAGATAAAAAA
1 TCAAATTTTTTGGTGTTGGCCATG-CATGGCCGACACCCCTTTTTATCTGA-ATAAAAAA
** * * * *
54832 TTTAATTTTTTGGTGTTGGCCATTGCATGACCGACACCCCTATTTATTTGATAAAAAAAA
1 TCAAATTTTTTGGTGTTGGCCA-TGCATGGCCGACACCCCTTTTTATCTGA-ATAAAAAA
* * *
54892 TC-AATTTTTTTGTGTTGACCATGCAATGACCGACA
1 TCAAATTTTTTGGTGTTGGCCATGC-ATGGCCGACA
54927 TCAACTTTTT
Statistics
Matches: 401, Mismatches: 81, Indels: 69
0.73 0.15 0.13
Matches are distributed among these distances:
56 1 0.00
57 6 0.01
58 12 0.03
59 152 0.38
60 113 0.28
61 45 0.11
62 32 0.08
63 19 0.05
64 21 0.05
ACGTcount: A:0.30, C:0.18, G:0.15, T:0.37
Consensus pattern (58 bp):
TCAAATTTTTTGGTGTTGGCCATGCATGGCCGACACCCCTTTTTATCTGAATAAAAAA
Found at i:56254 original size:12 final size:12
Alignment explanation
Indices: 56236--56269 Score: 50
Period size: 12 Copynumber: 2.8 Consensus size: 12
56226 ATATTGGGGA
*
56236 TCGGGTTGGTGC
1 TCGGGTTGGTAC
*
56248 TCTGGTTGGTAC
1 TCGGGTTGGTAC
56260 TCGGGTTGGT
1 TCGGGTTGGT
56270 CCTGGGTCTC
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
12 19 1.00
ACGTcount: A:0.03, C:0.15, G:0.44, T:0.38
Consensus pattern (12 bp):
TCGGGTTGGTAC
Found at i:56909 original size:22 final size:22
Alignment explanation
Indices: 56884--56943 Score: 120
Period size: 22 Copynumber: 2.7 Consensus size: 22
56874 TGTAAAAAAA
56884 ATATTTCGAAAATGTATTTTTT
1 ATATTTCGAAAATGTATTTTTT
56906 ATATTTCGAAAATGTATTTTTT
1 ATATTTCGAAAATGTATTTTTT
56928 ATATTTCGAAAATGTA
1 ATATTTCGAAAATGTA
56944 AAAAATATTT
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 38 1.00
ACGTcount: A:0.35, C:0.05, G:0.10, T:0.50
Consensus pattern (22 bp):
ATATTTCGAAAATGTATTTTTT
Found at i:57035 original size:20 final size:20
Alignment explanation
Indices: 56992--57035 Score: 52
Period size: 20 Copynumber: 2.2 Consensus size: 20
56982 TAAAAATTCG
* * *
56992 AAAATATAAAAAACATTTTG
1 AAAATAGAAAAAACATTATA
*
57012 AAAATAGAAAAAATATTATA
1 AAAATAGAAAAAACATTATA
57032 AAAA
1 AAAA
57036 ATTCGAAAAT
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.68, C:0.02, G:0.05, T:0.25
Consensus pattern (20 bp):
AAAATAGAAAAAACATTATA
Found at i:57320 original size:61 final size:58
Alignment explanation
Indices: 57255--57598 Score: 302
Period size: 60 Copynumber: 5.7 Consensus size: 58
57245 TGGCCAACAT
* * *
57255 AAAAAATTGATCTTTTACCAGATAAAAAAGCGGGTGTCGGCCATGGCATGACCAATACCCA
1 AAAAAATTGATTTTTTATCAGAT-AAAAAG-GGGTGTCGGCCATGGCATGACCAACA-CCA
*** * **
57316 AAAAAATTTGAATTTTTTATTTTACAAAAAAAGGTGTCGGCCATGGCATGACCAACACC-
1 AAAAAA-TTG-ATTTTTTATCAGATAAAAAGGGGTGTCGGCCATGGCATGACCAACACCA
* * *
57375 AAAAATTTGATTTTTTATTCAGATAAAAAGGGGTGTCGGCCAT-GCAATGGCCAATACCA
1 AAAAAATTGATTTTTTA-TCAGATAAAAAGGGGTGTCGGCCATGGC-ATGACCAACACCA
* *
57434 AAAAAATTTGATTTTTTTATCAGATAAATAGGGGTGTC-GCTCATGGCATGGCCAACACCA
1 AAAAAA-TTGA-TTTTTTATCAGATAAAAAGGGGTGTCGGC-CATGGCATGACCAACACCA
* * * * * *
57494 AAAAAATTAAATTTTTTATCTGACAAAACTA-GGGTGTCAGG-CATTGCATGAGCAACACCC
1 AAAAAATT-GATTTTTTATCAGATAAAA--AGGGGTGTC-GGCCATGGCATGACCAACACCA
* * *
57554 AAAAATTTAATGTTTTTATCAGATTAAAAAGGGGCGTCGGCCATG
1 AAAAAATTGAT-TTTTTATCAGA-TAAAAAGGGGTGTCGGCCATG
57599 TAATGTTCAA
Statistics
Matches: 231, Mismatches: 34, Indels: 37
0.76 0.11 0.12
Matches are distributed among these distances:
57 10 0.04
58 32 0.14
59 34 0.15
60 94 0.41
61 44 0.19
62 9 0.04
63 8 0.03
ACGTcount: A:0.37, C:0.17, G:0.19, T:0.28
Consensus pattern (58 bp):
AAAAAATTGATTTTTTATCAGATAAAAAGGGGTGTCGGCCATGGCATGACCAACACCA
Found at i:57491 original size:118 final size:120
Alignment explanation
Indices: 57242--57498 Score: 319
Period size: 118 Copynumber: 2.2 Consensus size: 120
57232 ATTGAATATT
*
57242 GCATGGCCAACA-TAAAAAATTGATCTTTTACCAGATAAAAAAGCGGGTGTCGGCCATGGCATGA
1 GCATGGCCAACACCAAAAAATTGATCTTTTACCAGATAAAAAAGCGGGTGTCGGCCATGGCATGA
***
57306 CCAATACCCAAAAAAATTTGAATTTTTTATTTTACAAAAAAAGGTGTCGGCCATG
66 CCAATACCCAAAAAAATTTGAATTTTTTATCAGACAAAAAAAGGTGTCGGCCATG
* * * *
57361 GCATGACCAACACCAAAAATTTGATTTTTTATTCAGAT-AAAAAG-GGGTGTCGGCCAT-GCAAT
1 GCATGGCCAACACCAAAAAATTGATCTTTTA-CCAGATAAAAAAGCGGGTGTCGGCCATGGC-AT
* * * * **
57423 GGCCAATA-CCAAAAAAATTTGATTTTTTTATCAGATAAATAGGGGTGTC-GCTCATG
64 GACCAATACCCAAAAAAATTTGAATTTTTTATCAGACAAAAAAAGGTGTCGGC-CATG
57479 GCATGGCCAACACCAAAAAA
1 GCATGGCCAACACCAAAAAA
57499 ATTAAATTTT
Statistics
Matches: 118, Mismatches: 16, Indels: 9
0.83 0.11 0.06
Matches are distributed among these distances:
117 2 0.02
118 57 0.48
119 33 0.28
120 21 0.18
121 5 0.04
ACGTcount: A:0.37, C:0.18, G:0.19, T:0.26
Consensus pattern (120 bp):
GCATGGCCAACACCAAAAAATTGATCTTTTACCAGATAAAAAAGCGGGTGTCGGCCATGGCATGA
CCAATACCCAAAAAAATTTGAATTTTTTATCAGACAAAAAAAGGTGTCGGCCATG
Found at i:59093 original size:28 final size:28
Alignment explanation
Indices: 59061--59118 Score: 73
Period size: 28 Copynumber: 2.1 Consensus size: 28
59051 ATATTATTGA
* *
59061 TTATGTTGTATTGTTTTGTTT-GATTTAT
1 TTATGTTATATTATTTTGTTTAG-TTTAT
*
59089 TTATGTTATTTTATTTTGTTTAGTTTAT
1 TTATGTTATATTATTTTGTTTAGTTTAT
59117 TT
1 TT
59119 GATTAAAATG
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
28 25 0.96
29 1 0.04
ACGTcount: A:0.16, C:0.00, G:0.14, T:0.71
Consensus pattern (28 bp):
TTATGTTATATTATTTTGTTTAGTTTAT
Found at i:72576 original size:16 final size:18
Alignment explanation
Indices: 72536--72576 Score: 50
Period size: 19 Copynumber: 2.3 Consensus size: 18
72526 ACTATTAGTG
*
72536 ATAATTTTTATAATAATTA
1 ATAATTTTTAGAAT-ATTA
72555 ATAATTTTTAGAAT-TTA
1 ATAATTTTTAGAATATTA
72572 A-AATT
1 ATAATT
72577 ACGTAATTAT
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
16 4 0.19
17 4 0.19
19 13 0.62
ACGTcount: A:0.46, C:0.00, G:0.02, T:0.51
Consensus pattern (18 bp):
ATAATTTTTAGAATATTA
Found at i:83549 original size:18 final size:17
Alignment explanation
Indices: 83526--83560 Score: 52
Period size: 17 Copynumber: 2.0 Consensus size: 17
83516 GCCCTTAAAT
83526 TTGATAAATTTTTTTATC
1 TTGAT-AATTTTTTTATC
*
83544 TTGATAGTTTTTTTATC
1 TTGATAATTTTTTTATC
83561 ACTTTAATTT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 11 0.69
18 5 0.31
ACGTcount: A:0.23, C:0.06, G:0.09, T:0.63
Consensus pattern (17 bp):
TTGATAATTTTTTTATC
Found at i:83772 original size:18 final size:17
Alignment explanation
Indices: 83711--83778 Score: 55
Period size: 18 Copynumber: 3.8 Consensus size: 17
83701 TTATTTATTC
* *
83711 TAAAAATTTGAAAAAACT
1 TAAAAA-TTCAAAAAATT
* *
83729 TAAAAATTCAAATATATA
1 TAAAAATTCAAA-AAATT
*
83747 TATAAATTCAAAAAATT
1 TAAAAATTCAAAAAATT
*
83764 TAAACAATTTAAAAA
1 TAAA-AATTCAAAAA
83779 TATATTATAT
Statistics
Matches: 39, Mismatches: 9, Indels: 4
0.75 0.17 0.08
Matches are distributed among these distances:
17 11 0.28
18 28 0.72
ACGTcount: A:0.62, C:0.06, G:0.01, T:0.31
Consensus pattern (17 bp):
TAAAAATTCAAAAAATT
Done.