Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01004463.1 Kokia drynarioides strain JFW-HI SEQ_117878, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3264
ACGTcount: A:0.35, C:0.15, G:0.13, T:0.37


Found at i:2196 original size:17 final size:17

Alignment explanation


    Indices: 2158--2215  Score: 62
    Period size: 17  Copynumber: 3.4  Consensus size: 17

       2148 ATATTATTTA

                             *
       2158 TAAATTAATTTAATCAAA
          1 TAAATTAATTT-ATCAAT

                       *     
       2176 TAAATTAATTTTTCAAT
          1 TAAATTAATTTATCAAT

                 *     *     
       2193 TAAATAAATTTCTCAAT
          1 TAAATTAATTTATCAAT

             *    
       2210 TCAATT
          1 TAAATT

       2216 CTAATACCAT


Statistics
Matches: 34,  Mismatches: 6, Indels: 1
        0.83            0.15        0.02

Matches are distributed among these distances:
  17   23  0.68
  18   11  0.32

ACGTcount: A:0.47, C:0.09, G:0.00, T:0.45


Consensus pattern (17 bp):   
TAAATTAATTTATCAAT
Done.