Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01000447.1 Kokia drynarioides strain JFW-HI SEQ_111297, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 5638
ACGTcount: A:0.32, C:0.16, G:0.20, T:0.33


Found at i:5268 original size:46 final size:45

Alignment explanation


    Indices: 5202--5292  Score: 164
    Period size: 46  Copynumber: 2.0  Consensus size: 45

       5192 TCAACTTTAG

                                       *                 
       5202 TCAACATCCAGTTTTCTCATTCTTCTAGAGCCCTTGGCCAAATCT
          1 TCAACATCCAGTTTTCTCATTCTTCTACAGCCCTTGGCCAAATCT

                                                          
       5247 TCAACATCCAAGTTTTCTCATTCTTCTACAGCCCTTGGCCAAATCT
          1 TCAACATCC-AGTTTTCTCATTCTTCTACAGCCCTTGGCCAAATCT

       5293 ACAATATTTT


Statistics
Matches: 44,  Mismatches: 1, Indels: 1
        0.96            0.02        0.02

Matches are distributed among these distances:
  45    9  0.20
  46   35  0.80

ACGTcount: A:0.23, C:0.32, G:0.10, T:0.35


Consensus pattern (45 bp):   
TCAACATCCAGTTTTCTCATTCTTCTACAGCCCTTGGCCAAATCT
Done.